View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_3 (Length: 558)
Name: NF12812_low_3
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 545
Target Start/End: Original strand, 886831 - 887369
Alignment:
| Q |
19 |
agtaaatgatttaatattatatagatgttgccactcatacatacatatactat------cctaacttatttaatttgtttgtttatgtaga--------- |
103 |
Q |
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| T |
886831 |
agtaaatgatttaatat---atagatgttgccactcatacatacatatactatgcataaccttaattatttaatttgtttgtttatgtagacataaggtt |
886927 |
T |
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| Q |
104 |
------gggcactattttgcaggacaagcggatctgctttacaatgaaattcatactcctattaagggtcttaacgttatgtttgatagtggaaccaccc |
197 |
Q |
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| T |
886928 |
gaggaaggacactattatgcaggacaagcggatctgctttacaatggaattcatactcctattagggttcttagccttttgtttgatagtggaaccaccc |
887027 |
T |
|
| Q |
198 |
tttcatacctcaattctaaagactatgaagttcttctcaaacttgtgagcaaaaatcatagaaattaaataactataacgttttcagttcataatggttg |
297 |
Q |
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| T |
887028 |
tttcatacctcaattctaaagactataaagttcttctcgatcttgtgagcaaaaatcatagaaattaaataactataacgttttcagttcatagtggttg |
887127 |
T |
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| Q |
298 |
ttgatcaaatattaattgatattttagataaacacagaattgaataataaaggaacgtttaaacaagctgaggaagacgatctaatttgttggacgggta |
397 |
Q |
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| T |
887128 |
ttgatcaaatattaattgatattttagataaacacagaattgaataataaaggaacgtttaaaaaagctgaggaagacgatctaatttgttggacgggta |
887227 |
T |
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| Q |
398 |
agatatttcagtctatagaccaagtgagcaaagattatttgaagcctataatattgagcatcacaaacaacaaaaacaatgtgaagtttgaattactagt |
497 |
Q |
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| T |
887228 |
agatatttcagtctatagaccaagtgagcaaagattatttgaagcctataatattgagcatcacaaac------aacaatgtgaagtttgaattacaagt |
887321 |
T |
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| Q |
498 |
taaacattatataaaactgtcggtgagcacctttttattaagctacct |
545 |
Q |
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| T |
887322 |
tgaacattatataaccctctcggtgagcacctttttgtgaagctacct |
887369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 31875246 - 31875184
Alignment:
| Q |
269 |
actataacgttttcagttcataatggttgttgatcaaatattaattgatattttagataaaca |
331 |
Q |
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| T |
31875246 |
actataacattttcagttcatagtggttgttgatcaaatattaattaatattttagataaaca |
31875184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 453
Target Start/End: Complemental strand, 31881711 - 31881544
Alignment:
| Q |
292 |
tggttgttgatcaaatattaattgatattttagataaacacagaattgaataataaag---gaacgtttaaacaagctgaggaagacgatctaatttgtt |
388 |
Q |
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||||||||||||||||||||||| |||||| ||||| ||| ||||||||| ||||| ||| ||||| || | ||||||||| ||||| ||||| |
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| T |
31881711 |
tggttgttgatcaaatattaattaatatttcagatacacattgaattgaattttaaaggaagaaagtttacacctattaaggaagacggtctaaattgtt |
31881612 |
T |
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| Q |
389 |
ggacgggt---aagatatttcagtctatagaccaagtgagcaaagattatttgaagcctataatattg |
453 |
Q |
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| T |
31881611 |
ggaagggtgacaaaccatttaagtctatagacgaagtgagcaaagggtatttgaagcctatgatattg |
31881544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 31875100 - 31875053
Alignment:
| Q |
408 |
gtctatagaccaagtgagcaaagattatttgaagcctataatattgag |
455 |
Q |
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| T |
31875100 |
gtctatagacgaagtgagcaaagactatttgaagcctataataatgag |
31875053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 29146696 - 29146628
Alignment:
| Q |
307 |
tattaattgatattttagataaacacagaattgaataataaaggaacgtttaaacaagctgaggaagac |
375 |
Q |
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| T |
29146696 |
tattaattgatatttcagataaacaaagaattgaattcgaaagaaacgtttacacaagctaaggaagac |
29146628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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