View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12812_low_4 (Length: 543)
Name: NF12812_low_4
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 36017500 - 36018034
Alignment:
| Q |
1 |
cataaactctgtgtgtcctggctttgtcaagactgatatgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017500 |
cataaactctgtgtgtcctggctttgtcaagactgatatgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggca |
36017599 |
T |
|
| Q |
101 |
ctattgtcaaataatggtccttctggttgtttctttactaagggtgaagtaatacccttttgatcatta-----------tcctaatagtattcttctat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
36017600 |
ctattgtcaaataatggtccttctggttgtttctttactaagggtgaagtaatacccttttgatcattatttgattattatcctaatagtgttcttctat |
36017699 |
T |
|
| Q |
190 |
tctagaaatgaagtgacacccttttgatcaaaggtatatgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
36017700 |
tctagaaatgaagtgacacccttttgatcaaaggtatatgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaaatttgaacc |
36017799 |
T |
|
| Q |
290 |
tagcacaagaaaaataaaatggcacattgatgggaacaatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttc |
389 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36017800 |
tagcacaagaaaaataaagtggcacattgatgggaacaatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaactta |
36017899 |
T |
|
| Q |
390 |
ttannnnnnnggcgttaatcttccggtttccaggggaaagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacc |
489 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36017900 |
tt--ttttttggctttaaccttccggtttccaggggaaagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacc |
36017997 |
T |
|
| Q |
490 |
caaaaatcgaactcgggttctccctaacatttcgtct |
526 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
36017998 |
caagaattgaactcgggttctccctaacatttcgtct |
36018034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 28889326 - 28889655
Alignment:
| Q |
2 |
ataaactctgtgtgtcctggctttgtcaagactgatatgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28889326 |
ataaactctgtgtgtcctggctttgtcaagactgatatgaataacaatattggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcac |
28889425 |
T |
|
| Q |
102 |
tattgtcaaataatggtccttctggttgtttctttactaagggtgaagtaatacccttttgatc---attatcctaatagtattcttctattctagaaat |
198 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||| |
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|
| T |
28889426 |
tatggtcaaataatggtccttctggttgtttctttaataagggtgaagtaatatccttttgatcattattatcctaatagtgttcttatattctagaaat |
28889525 |
T |
|
| Q |
199 |
gaagtgacacccttttgatcaaaggtatatgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaag |
298 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28889526 |
gaagtgacacccttttgatcaaaagtttatgttatgtatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaac |
28889625 |
T |
|
| Q |
299 |
aaaaataaaatggcacattgatgggaacaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28889626 |
aaaaataaaatggcacattgatgggaacaa |
28889655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 12023778 - 12023837
Alignment:
| Q |
466 |
agcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgtc |
525 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
12023778 |
agcctgaccaagaattgttccacccaggaatcgaactcgggtcctcccgaacaattcgtc |
12023837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 14377761 - 14377716
Alignment:
| Q |
457 |
aataaggatagcctgacaaaaaattgttccacccaaaaatcgaact |
502 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||| ||||| |
|
|
| T |
14377761 |
aataaggatagtctgaccaagaattgttccacccaaaaattgaact |
14377716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 23767470 - 23767418
Alignment:
| Q |
459 |
taaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctc |
511 |
Q |
| |
|
||||||||||||||| || |||||||| ||| || |||||||| ||||||||| |
|
|
| T |
23767470 |
taaggatagcctgacgaagaattgttctacctaagaatcgaacccgggttctc |
23767418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 526
Target Start/End: Complemental strand, 24532880 - 24532835
Alignment:
| Q |
481 |
tgttccacccaaaaatcgaactcgggttctccctaacatttcgtct |
526 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| ||||||| |
|
|
| T |
24532880 |
tgtttcacccaagaatcgaactcgggttctcccgaacaattcgtct |
24532835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 510
Target Start/End: Original strand, 35851703 - 35851735
Alignment:
| Q |
478 |
aattgttccacccaaaaatcgaactcgggttct |
510 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
35851703 |
aattgttccatccaaaaatcgaactcgggttct |
35851735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 12628211 - 12628255
Alignment:
| Q |
469 |
ctgacaaaaaattgttccacccaaaaatcgaactcgggttctccc |
513 |
Q |
| |
|
|||||||||||||||||||||||| |||| || || ||||||||| |
|
|
| T |
12628211 |
ctgacaaaaaattgttccacccaacaatcaaattcaggttctccc |
12628255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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