View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12812_low_5 (Length: 445)

Name: NF12812_low_5
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12812_low_5
NF12812_low_5
[»] chr1 (3 HSPs)
chr1 (24-352)||(39210040-39210351)
chr1 (211-393)||(24036791-24036978)
chr1 (23-95)||(7673906-7673978)
[»] chr8 (3 HSPs)
chr8 (211-394)||(27513624-27513807)
chr8 (26-185)||(27510640-27510799)
chr8 (252-394)||(8675102-8675245)
[»] chr3 (1 HSPs)
chr3 (240-394)||(9461134-9461298)
[»] chr2 (2 HSPs)
chr2 (221-333)||(38950770-38950885)
chr2 (54-95)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (285-337)||(18331979-18332031)
chr6 (216-283)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (44-182)||(42091774-42091912)
chr4 (43-159)||(31949210-31949326)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 24 - 352
Target Start/End: Complemental strand, 39210351 - 39210040
Alignment:
Q  24 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtcca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||    
T  39210351 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattctttaaaaa-tgtcca 39210253  T
Q  124 accgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattcta 223  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  39210252 accgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattcta 39210153  T
Q  224 cactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||                |||||| ||||||||||||||||||||||||||||||||    
T  39210152 cactcacaacattggaatctaatctattcatattcaaattagttc----------------aaaaaaatcaacctcttcatcatcaggcttgcagatagt 39210069  T
Q  324 ttcatcaacttcccttgtattttcaaggt 352  Q
    |||||||||||||||||||||||||||||    
T  39210068 ttcatcaacttcccttgtattttcaaggt 39210040  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 211 - 393
Target Start/End: Original strand, 24036791 - 24036978
Alignment:
Q  211 aatatatattctacactcacaacattggaatctaatctattcatattcaaatt-agttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 309  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||||| || ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  310 gg----cttgcagatagtttcatcaacttcccttgtattttcaagg-tcttcggcaccttcttctctggaagctacaacaacacagaaa 393  Q
    ||    |||||||||||||||||||||||  ||||||| ||| |   ||||||||| ||| ||||| ||||||||||||||||||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtatcttcgatcatcttcggcagctttttctccggaagctacaacaacacagaaa 24036978  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 7673906 - 7673978
Alignment:
Q  23 agcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 95  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673906 agcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

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Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 211 - 394
Target Start/End: Original strand, 27513624 - 27513807
Alignment:
Q  211 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 310  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  311 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacaacaacacagaaat 394  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacgacaacacagaaat 27513807  T

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Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 27510640 - 27510799
Alignment:
Q  26 atattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgat-aaaattctttaaaaaatgtccaa 124  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||    
T  27510640 atattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattctttaaaa-atgtccaa 27510738  T
Q  125 ccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 185  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510739 ccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 252 - 394
Target Start/End: Complemental strand, 8675245 - 8675102
Alignment:
Q  252 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 350  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  351 gtcttcggcaccttcttctctggaagctacaacaacacagaaat 394  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  8675145 gtcttcggcaccttcttctccggaggctacaacaacacagaaat 8675102  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 394
Target Start/End: Complemental strand, 9461298 - 9461134
Alignment:
Q  240 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 330  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  331 acttcccttgtattttcaa-ggtcttcggcaccttcttctctggaagctacaacaacacagaaat 394  Q
    |||||| |  |||||||||   |||||  ||||||||| |  ||||||| |||||||||| ||||    
T  9461198 acttccttcttattttcaataatcttcaacaccttcttattcggaagctgcaacaacacaaaaat 9461134  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  221 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 314  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  315 gcagatagtttcatcaact 333  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  54 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 95  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  285 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 337  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  216 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 283  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  44 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 142  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  143 ttctcgttcctctttttgacagccacctcaaactcattct 182  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 31949326 - 31949210
Alignment:
Q  43 cagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgtccaaccgtcggtaaaatagac 141  Q
    ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | | ||||  ||||| |||||||||||||| || |||||||| ||    
T  31949326 cagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccattaaagctcttt-aaaaatgtccaaccatcagtaaaataaac 31949228  T
Q  142 tttctcgttcctcttttt 159  Q
      || ||||| |||||||    
T  31949227 cctcccgttcttcttttt 31949210  T

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