View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_6 (Length: 440)
Name: NF12812_low_6
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 40048176 - 40048583
Alignment:
| Q |
18 |
tttaccagccactgtctcaacagggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaatagttcgannnnnnng |
117 |
Q |
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| T |
40048176 |
tttaccagccactgtctcaacagggttactaagagaatcaaagttattgctatcaacaaactgtggaagaatgtggaattgtaatagttcgatttttttg |
40048275 |
T |
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| Q |
118 |
ttttcgtttagtgagttgaagaaccccgctttgagatgcgagaaagctgagtcatccggtgccaagattgttaatccgccgctttttggtgatatgagtt |
217 |
Q |
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| T |
40048276 |
ttttcgtttagcgagttgaagaaccctgctttgagatgcgagaaagctgagtcatccggtgccaagattgttaatccgccgctttttgctgatatgagtt |
40048375 |
T |
|
| Q |
218 |
gtgagtttaggttgtccacgatttgtgttgttcttaggagacgggttaggattgtgaatgttttcgcctttttgaggatttttgttatgtcgtccggggt |
317 |
Q |
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| T |
40048376 |
gtgagtttaggttgtccacgatttgtgttgttcttaggagacgggttaggattgtgaatgttttcgcctttttgaggatttttgttatgtcgtccggggt |
40048475 |
T |
|
| Q |
318 |
ggaatctgaggtgtctggtaatgtcgggactaatggttttgtcgatgttggtgacgctgcttttggtgccggggcatgtttcggtgacgctgctggtgct |
417 |
Q |
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| T |
40048476 |
ggaatctgaggtgtctggtaatgtcgggactaatggttttgtcgatgttggtgacgctgcttttggtgccggggcatgtttcggtgatgctgcttgtgct |
40048575 |
T |
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| Q |
418 |
gttgctgt |
425 |
Q |
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| T |
40048576 |
ggtgctgt |
40048583 |
T |
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Back To:
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 22056210 - 22056082
Alignment:
| Q |
183 |
gattgttaatccgccgctttttggtgatatgagttgtgagtttaggttgtccacgatttgtgttgttcttaggagacgggttaggattgtgaatgttttc |
282 |
Q |
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||||||||| |||||| |||||| || ||||| || ||||||| | || || ||||| ||||||| ||||||||||| |||||| | |||||||||| |
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| T |
22056210 |
gattgttaagccgccgttttttgctgtgatgagctgcgagtttacgctgctcatgatttctgttgtttttaggagacggattaggacggagaatgttttc |
22056111 |
T |
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| Q |
283 |
gcctttttgaggatttttgttatgtcgtc |
311 |
Q |
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| T |
22056110 |
gcctttttaaggattgttgtgatgtcgtc |
22056082 |
T |
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