View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_7 (Length: 430)
Name: NF12812_low_7
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 40992141 - 40991988
Alignment:
| Q |
263 |
caggtgctacgtgatcgcttgaaaaatattcttcaagaggacgagatttttgtttgtgacatgacatctaggaagaggaatcgtgttgctgatgtaggtt |
362 |
Q |
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| T |
40992141 |
caggtgctacgtgatcgcttgaaaaatattcttcaagaggacgagatttttgtttgtgacatgacatctaggaagaggaatcgtgttgctgatgtaggtt |
40992042 |
T |
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| Q |
363 |
tttgtgatttccttaatttcttcttatgttacttataatctcagtttgcctgtt |
416 |
Q |
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| T |
40992041 |
tttgtgatttccttaatttcttcttatgttacttataatctcagtttgcctgtt |
40991988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 40992381 - 40992284
Alignment:
| Q |
23 |
cgttttctcaaagaaaatcaacgattaagaagaaagagtaacgttgttgaacatactcacagaacaagtaagctaatgttgtttgaatcatgcatagg |
120 |
Q |
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| T |
40992381 |
cgttttctcaaagaaaatcaacgattaagaagaaagagtaacgttgttgaacatactcacagaacaagtaagctaatgttgtttgaatcatgcatagg |
40992284 |
T |
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