View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12812_low_8 (Length: 420)
Name: NF12812_low_8
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12812_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 38909816 - 38910208
Alignment:
| Q |
16 |
caaacatcatagcatattagagaccatcaattttgatggtggcattttgaattgatgtgttttgaatttgattaacttgaataagattacatcgtaattt |
115 |
Q |
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| T |
38909816 |
caaacatcatagcatattagagaccatcaattttgatggtggcattttgaattgatgtgttttgaatttgattaacttgaataagattacatcgtaattt |
38909915 |
T |
|
| Q |
116 |
atgtcaagaaaataaccagccaaattgaaggctaagaaacactgtaaatcagtaattttttaaaaatcaaacattagttccttaaactaaatggattaat |
215 |
Q |
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| T |
38909916 |
atgtcaagaaaataaccagccaaattgaaggctaagaaacactgtaaatcagtaatttttttaaaatcaaacattagttccttaaactaaatggattaat |
38910015 |
T |
|
| Q |
216 |
taatgacaagaaaaaacgaaatcatagccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaat |
315 |
Q |
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| T |
38910016 |
taatgacaagaaacaacgaaatcatagccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaat |
38910115 |
T |
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| Q |
316 |
ccaccaaacaacttaccacctataaacaccattggaaactgcacatttccttcaattattgattccaattctcttgcaacaatcacttcatct |
408 |
Q |
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| T |
38910116 |
ccaccaaacaacttaccacctataaacaccattggaaactgcacatttccttcaattattgattccaattctcttgcaacaatcacttcatct |
38910208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 30540535 - 30540638
Alignment:
| Q |
241 |
agccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccaccaaacaacttaccacctataa |
340 |
Q |
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|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| ||||| | ||||||| ||| |||||||| || |||||||||| |
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| T |
30540535 |
agccataaagctcctgcttgtttaagaatggggaccaattcaccagaaatatgagtggccataattcgatccagtcctccaaacaaatttccacctataa |
30540634 |
T |
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| Q |
341 |
acac |
344 |
Q |
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|||| |
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| T |
30540635 |
acac |
30540638 |
T |
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