View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12812_low_9 (Length: 413)

Name: NF12812_low_9
Description: NF12812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12812_low_9
NF12812_low_9
[»] chr8 (10 HSPs)
chr8 (18-191)||(4141942-4142115)
chr8 (21-187)||(4129594-4129760)
chr8 (284-400)||(4141756-4141872)
chr8 (24-175)||(4119570-4119725)
chr8 (21-188)||(4149967-4150138)
chr8 (21-152)||(4159120-4159251)
chr8 (215-260)||(4141896-4141941)
chr8 (291-403)||(9779781-9779894)
chr8 (285-340)||(7503887-7503942)
chr8 (202-246)||(9779927-9779971)
[»] chr7 (2 HSPs)
chr7 (288-391)||(5031193-5031297)
chr7 (287-396)||(26554366-26554476)
[»] chr4 (3 HSPs)
chr4 (285-396)||(3516841-3516953)
chr4 (285-357)||(29236550-29236622)
chr4 (202-259)||(11167120-11167177)
[»] chr6 (5 HSPs)
chr6 (285-403)||(9860125-9860244)
chr6 (285-391)||(6120084-6120191)
chr6 (285-357)||(26304314-26304386)
chr6 (284-357)||(30351220-30351293)
chr6 (204-248)||(22607389-22607433)
[»] chr1 (3 HSPs)
chr1 (287-403)||(41151223-41151340)
chr1 (202-260)||(38703383-38703441)
chr1 (202-259)||(27232417-27232473)
[»] chr2 (7 HSPs)
chr2 (334-402)||(19546580-19546648)
chr2 (287-403)||(15954324-15954441)
chr2 (287-388)||(32188360-32188462)
chr2 (287-375)||(11112927-11113015)
chr2 (202-237)||(40453257-40453292)
chr2 (296-397)||(32973526-32973628)
chr2 (202-259)||(2461419-2461476)
[»] chr3 (2 HSPs)
chr3 (285-403)||(19116686-19116804)
chr3 (337-403)||(26618587-26618654)
[»] scaffold0426 (1 HSPs)
scaffold0426 (293-403)||(2579-2689)
[»] chr5 (2 HSPs)
chr5 (285-340)||(8760018-8760073)
chr5 (289-403)||(30860589-30860702)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 4142115 - 4141942
Alignment:
Q  18 atcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttctcaacaaagtcatcgatctaactcaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142115 atcacacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttctcaacaaagtcatcgatctaactcaaaca 4142016  T
Q  118 acaatgtaaccatgagcgatgtcacaggcaggtaaataatatgcatgggatcaatactaccattgttaagaggg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4142015 acaatgtaaccatgagcgatgtcacaggcaggtaaataatatgcatgggatcaatactaccattgttaacaggg 4141942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 4129760 - 4129594
Alignment:
Q  21 acacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttctcaacaaagtcatcgatctaactcaaacaaca 120  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4129760 acacatcttccacctcccggtaaagttgcatttgttcacaaccaaaattctcgaagtacagaatcttctcaacaaagtcatcgatctaactcaaacaaca 4129661  T
Q  121 atgtaaccatgagcgatgtcacaggcaggtaaataatatgcatgggatcaatactaccattgttaag 187  Q
    |||||||  |||| |||||||  |||||||||||||||||| || ||| ||||||||||||||||||    
T  4129660 atgtaactttgagtgatgtcattggcaggtaaataatatgcttgagatgaatactaccattgttaag 4129594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 4141872 - 4141756
Alignment:
Q  284 cacttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatttcaactatacattgtccgtagg 383  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4141872 cacttgtaactacggacaaaatccgtcataaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatttcaactatacattgtccatagg 4141773  T
Q  384 taaatgtcaatttgtct 400  Q
    |||||||||||||||||    
T  4141772 taaatgtcaatttgtct 4141756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 4119725 - 4119570
Alignment:
Q  24 catcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtac---agaatcttctcaacaaagtcatcgatctaactcaaacaaca 120  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    |||||   ||||||||||||| | || |||| |||||||||||||||||    
T  4119725 catcttccacctccaggtaaagttgcatttgttcacaagcaaaattcaaagagtactacagaatcttctcaaaagaggcatcaatctaactcaaacaaca 4119626  T
Q  121 atgtaaccatgagcgatgtcacaggcaggtaaataatatg-catgggatcaatact 175  Q
    |||||||  |||| ||||||||||||||||||||||||||  ||||||||||||||    
T  4119625 atgtaactttgagtgatgtcacaggcaggtaaataatatgtaatgggatcaatact 4119570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 4150138 - 4149967
Alignment:
Q  21 acacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtac---agaatcttctcaacaaagtcatcgatctaactcaaaca 117  Q
    ||||||||||| ||||| || | ||||||||||||||||||||||| |||    |||||   ||||||||||||| ||||||||| ||||||||||||||    
T  4150138 acacatcttcctcctccggggagagttgcatttgttcacaagcaaagttcaaagagtactacagaatcttctcaaaaaagtcatcaatctaactcaaaca 4150039  T
Q  118 acaatgtaaccatgagcgatgtcacaggcaggtaaa-taatatgcatgggatcaatactaccattgttaaga 188  Q
    ||||||||||  | || || ||   ||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  4150038 acaatgtaactctcagtgaagttcaaggcaggtaaactaacatgcatgggatcaatactataattgttaaga 4149967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 4159251 - 4159120
Alignment:
Q  21 acacatcttccacctcctggtaaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttctcaacaaagtcatcgatctaactcaaacaaca 120  Q
    ||||||||||| ||||| || |||||||||||||| |||||| |||||||    |||  ||||||||||||| ||||||| | |||||||||||||||||    
T  4159251 acacatcttcctcctccaggaaaagttgcatttgtccacaagaaaaattccaagagtggagaatcttctcaaaaaagtcaacaatctaactcaaacaaca 4159152  T
Q  121 atgtaaccatgagcgatgtcacaggcaggtaa 152  Q
     ||||||  |||| || |||  ||||||||||    
T  4159151 gtgtaactctgagtgaagtccaaggcaggtaa 4159120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 4141941 - 4141896
Alignment:
Q  215 ggtccttggcacagggcctcaaacttaaaggggctttaaaatttgg 260  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  4141941 ggtccttggcacagggcctcaaacttaaagaggcttcaaaatttgg 4141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 9779894 - 9779781
Alignment:
Q  291 acctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggtaaatg 389  Q
    |||||||||||||||||||||| |||| ||||||| |  |||||||||||  ||||||| |||| |||| | |||| | ||||||||  |||||||||||    
T  9779894 acctacggacaaaatccgtcattaaatatcattttcccataagtaaaagtctagaattccactattttactatcaattgtacattgtttgtaggtaaatg 9779795  T
Q  390 tcaatttgtctgtg 403  Q
    |   ||||||||||    
T  9779794 tgtgtttgtctgtg 9779781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 7503887 - 7503942
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagt 340  Q
    ||||||| |||| ||||||||| ||||| ||||||||||||| |||| ||||||||    
T  7503887 acttgtatctacagacaaaatctgtcattaaatgtcatttttttgtaggtaaaagt 7503942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 9779971 - 9779927
Alignment:
Q  202 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggg 246  Q
    |||||||||||||| ||||||||||| | |||||| |||||||||    
T  9779971 gcaagtgcatcaagttccttggcacaagacctcaagcttaaaggg 9779927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 391
Target Start/End: Original strand, 5031193 - 5031297
Alignment:
Q  288 tgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggtaa 386  Q
    |||||||||||||||||| |||||  ||||||||||||||  ||| ||||||| ||||||||||||| |||| | |||| |||||||||| |||||||||    
T  5031193 tgtacctacggacaaaattcgtcactaaatgtcatttttccataaataaaagtccagaattcaactattttactgtcaattatacattgttcgtaggtaa 5031292  T
Q  387 atgtc 391  Q
    |||||    
T  5031293 atgtc 5031297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 26554476 - 26554366
Alignment:
Q  287 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtaggta 385  Q
    ||||||||||||||||||| |||||  ||||||||||| |||||| |||||||| |  ||||||||||||| | | || |  |||||||||||||| |||    
T  26554476 ttgtacctacggacaaaatacgtcactaaatgtcatttatctgtaggtaaaagtccgaaattcaactattttactgtccataatacattgtccgtaagta 26554377  T
Q  386 aatgtcaattt 396  Q
    |||||| ||||    
T  26554376 aatgtctattt 26554366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 396
Target Start/End: Complemental strand, 3516953 - 3516841
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtagg 383  Q
    |||| |||||||||||||||| |||||  |||||||||||||  ||| ||||||||  ||||||||||||||| ||| |||| |||||||| ||||||||    
T  3516953 acttatacctacggacaaaattcgtcactaaatgtcattttttcgtaggtaaaagtctagaattcaactattttattgtcaattatacattctccgtagg 3516854  T
Q  384 taaatgtcaattt 396  Q
    |||||||| ||||    
T  3516853 taaatgtctattt 3516841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 29236550 - 29236622
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactattt 357  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||| |||||||| ||||| ||||||||||    
T  29236550 acttgtacctacggacaaaatccgtcactaaatgtcatttttccgtaggtaaaagtccagaaatcaactattt 29236622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 11167177 - 11167120
Alignment:
Q  202 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttg 259  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  11167177 gcaagtgcatctaggcccttggcacagggcctcaaacttaaaggggcttcaaaatttg 11167120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 9860125 - 9860244
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtagg 383  Q
    |||||||||||| |||||||||| |||| |||| || |||||| ||| ||||||||| |||||||||||| |||| | ||||  || ||||||| |||||    
T  9860125 acttgtacctacagacaaaatccttcattaaatatcttttttccgtaggtaaaagtttagaattcaactattttactgtcaatgatgcattgtctgtagg 9860224  T
Q  384 taaatgtcaatttgtctgtg 403  Q
    |||||||| |||||||||||    
T  9860225 taaatgtctatttgtctgtg 9860244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 6120191 - 6120084
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtagg 383  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||  |  ||| |||| ||||||||||||| |||| | |||| |||||||| ||||| ||    
T  6120191 acttgtacctatggacaaaatcggtcactaaatgtcatttttccttgggtagaagtccagaattcaactattttactgtcaattatacattatccgtcgg 6120092  T
Q  384 taaatgtc 391  Q
    ||||||||    
T  6120091 taaatgtc 6120084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 26304314 - 26304386
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactattt 357  Q
    |||| |||||||| ||||||||  |||| |||||||||||||||||| ||||||||  | |||||||| ||||    
T  26304314 acttctacctacgaacaaaatctatcataaaatgtcatttttctgtaggtaaaagtctaaaattcaacaattt 26304386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 30351293 - 30351220
Alignment:
Q  284 cacttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactattt 357  Q
    |||||| |||||||| |||||||| |||  |||||||||||||   || |||||||| || |||||||||||||    
T  30351293 cacttgcacctacggtcaaaatccatcactaaatgtcattttttcttaggtaaaagtccataattcaactattt 30351220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 22607433 - 22607389
Alignment:
Q  204 aagtgcatcaaggtccttggcacagggcctcaaacttaaaggggc 248  Q
    ||||||||||||| |||||||||| |||| ||||||| |||||||    
T  22607433 aagtgcatcaaggcccttggcacatggccacaaactttaaggggc 22607389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 41151223 - 41151340
Alignment:
Q  287 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaat-ttcaactatacattgtccgtaggta 385  Q
    |||||||| | ||||||||| ||||  |||||| ||||| |  ||||||||||| | |||||||||||| | || ||||| |||||||||||||||||||    
T  41151223 ttgtacctgcagacaaaatctgtcactaaatgttattttcccataagtaaaagtccggaattcaactatgttatgttcaattatacattgtccgtaggta 41151322  T
Q  386 aatgtcaatttgtctgtg 403  Q
    |||||| |||||| ||||    
T  41151323 aatgtctatttgtttgtg 41151340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 38703441 - 38703383
Alignment:
Q  202 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttgg 260  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||| || | |||||||||    
T  38703441 gcaagtgcatcaaggtccttggcacaaggcttcaaactcaaaggagcctcaaaatttgg 38703383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 27232473 - 27232417
Alignment:
Q  202 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttg 259  Q
    ||||||||||||||  |||||||||||||||| ||| ||| |||||||| ||||||||    
T  27232473 gcaagtgcatcaagc-ccttggcacagggccttaaagttagaggggcttcaaaatttg 27232417  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 19546648 - 19546580
Alignment:
Q  334 taaaagttcagaattcaactatttaatttcaactatacattgtccgtaggtaaatgtcaatttgtctgt 402  Q
    ||||||| ||||||||||||||||| | |||| |||||||||||| |||||||||||  ||||||||||    
T  19546648 taaaagtccagaattcaactatttactgtcaattatacattgtccataggtaaatgtatatttgtctgt 19546580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 15954324 - 15954441
Alignment:
Q  287 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtaggta 385  Q
    ||||||||||||||| |||  ||||  |||||  ||||||||||| |||||||   | ||||||||||||| | | |||| |||||||||| | ||||||    
T  15954324 ttgtacctacggacataatatgtcactaaatgcgatttttctgtaggtaaaagcctataattcaactattttactgtcaattatacattgttcataggta 15954423  T
Q  386 aatgtcaatttgtctgtg 403  Q
    |||||| |||||||||||    
T  15954424 aatgtctatttgtctgtg 15954441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 388
Target Start/End: Original strand, 32188360 - 32188462
Alignment:
Q  287 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggta 385  Q
    ||||||||| |||||||||| | ||  |||| |||| |||| ||| |||||| |||| |||||||||| |||| | |||| |||||||||| ||||||||    
T  32188360 ttgtacctaaggacaaaatctgccactaaatatcatgtttccgtaggtaaaaattcataattcaactattttactgtcaattatacattgttcgtaggta 32188459  T
Q  386 aat 388  Q
    |||    
T  32188460 aat 32188462  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 11113015 - 11112927
Alignment:
Q  287 ttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattg 375  Q
    ||||||||||| ||||||||| |||| |||||||||||||| ||| || ||| |||| ||||||| ||||| ||| |||| |||||||||    
T  11113015 ttgtacctacgaacaaaatccatcattaaatgtcatttttc-gtaggtgaaaattcataattcaattattttattgtcaattatacattg 11112927  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 40453292 - 40453257
Alignment:
Q  202 gcaagtgcatcaaggtccttggcacagggcctcaaa 237  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40453292 gcaagtgcatcaaggcccttggcacagggcctcaaa 40453257  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 32973526 - 32973628
Alignment:
Q  296 cggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaatt-tcaactatacattgtccgtaggtaaatgtcaat 394  Q
    ||||||| || |||||  ||||||||||||||||||  |||||||  | ||||| ||||||| ||| |||| |||||||| | ||| |||||||||| ||    
T  32973526 cggacaacattcgtcactaaatgtcatttttctgtagctaaaagtctaaaattctactattttattctcaattatacatttttcgttggtaaatgtctat 32973625  T
Q  395 ttg 397  Q
    |||    
T  32973626 ttg 32973628  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 2461419 - 2461476
Alignment:
Q  202 gcaagtgcatcaaggtccttggcacagggcctcaaacttaaaggggctttaaaatttg 259  Q
    |||||||||||||||||||||||||| |||||| || ||  |||||| | ||||||||    
T  2461419 gcaagtgcatcaaggtccttggcacatggcctctaagtttgaggggcctcaaaatttg 2461476  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 19116686 - 19116804
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtagg 383  Q
    |||||||||||||||||||||| |||   |||| |||||||| | || |||||| | ||||||||||||| |||| | |||| ||||||||||  |||||    
T  19116686 acttgtacctacggacaaaatctgtcgctaaatttcattttt-tttaggtaaaactccagaattcaactattttactatcaattatacattgtatgtagg 19116784  T
Q  384 taaatgtcaatttgtctgtg 403  Q
    |||||||  |||| ||||||    
T  19116785 taaatgtagatttttctgtg 19116804  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 26618654 - 26618587
Alignment:
Q  337 aagttcagaattcaactatttaatt-tcaactatacattgtccgtaggtaaatgtcaatttgtctgtg 403  Q
    ||||| ||||||||||||||| | | ||||||||||||||||||||  |||||||| |||||| ||||    
T  26618654 aagtttagaattcaactattttactgtcaactatacattgtccgtatataaatgtctatttgtttgtg 26618587  T

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Target: scaffold0426 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 403
Target Start/End: Original strand, 2579 - 2689
Alignment:
Q  293 ctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaacta-tttaatttcaactatacattgtccgtaggtaaatgtc 391  Q
    ||||||||||||| |||||  || ||||||||||||||| |||||||| || ||||||| || |||| | |||| |||||||| |  ||| |||||||||    
T  2579 ctacggacaaaattcgtcactaa-tgtcatttttctgtaggtaaaagtccaaaattcaattattttactatcaattatacattttatgtatgtaaatgtc 2677  T
Q  392 aatttgtctgtg 403  Q
     |||||| ||||    
T  2678 tatttgtgtgtg 2689  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 8760018 - 8760073
Alignment:
Q  285 acttgtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagt 340  Q
    ||||||| |||||||||||||||||||  |||| |||||||| |||| ||||||||    
T  8760018 acttgtatctacggacaaaatccgtcactaaatatcatttttttgtaggtaaaagt 8760073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 30860589 - 30860702
Alignment:
Q  289 gtacctacggacaaaatccgtcatgaaatgtcatttttctgtaagtaaaagttcagaattcaactatttaattt-caactatacattgtccgtaggtaaa 387  Q
    ||||| ||||||||| || ||||  |||||||||||| |||||  |||||||  ||||||||||||||| | |  ||| ||||| |||||||||||||||    
T  30860589 gtaccaacggacaaa-tctgtcactaaatgtcatttt-ctgtagataaaagtctagaattcaactattttactaacaattataccttgtccgtaggtaaa 30860686  T
Q  388 tgtcaatttgtctgtg 403  Q
    |||| |||||| ||||    
T  30860687 tgtctatttgtatgtg 30860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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