View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_high_15 (Length: 238)
Name: NF12813_high_15
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 29956269 - 29956441
Alignment:
| Q |
6 |
aattgtttgtgattttaaaactgtttttaagtgagaattgtgacatacatgctgttttaggttgtagaagagtaatttacttggttttcttggcataggt |
105 |
Q |
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| T |
29956269 |
aattgtttgtgattttaaaactgtttttaagtgagaattgtgacatacatgctgttttaggttgtagaagagtaatttacttggttttcttggcataggt |
29956368 |
T |
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| Q |
106 |
gattgatggatacttttatgttttgttttaaacatgtgattgtgtgtgtaaaataagagaaagctttgaagag |
178 |
Q |
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| T |
29956369 |
gattgatggacacttttatgttttgttttaaacatgtgattgtgtgtgtaaaataagagaaagctttgaagag |
29956441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 29956458 - 29956497
Alignment:
| Q |
191 |
ctatgttgaatttcatgtttagaccaatgcaatgctcatc |
230 |
Q |
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| T |
29956458 |
ctatgttgaatttcatgtttagaccaatgtaatgctcatc |
29956497 |
T |
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