View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12813_high_9 (Length: 309)

Name: NF12813_high_9
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12813_high_9
NF12813_high_9
[»] chr5 (2 HSPs)
chr5 (18-309)||(12540916-12541207)
chr5 (18-309)||(28385565-28385856)
[»] chr7 (1 HSPs)
chr7 (18-309)||(3417187-3417475)
[»] chr2 (3 HSPs)
chr2 (18-309)||(13440431-13440722)
chr2 (18-309)||(13448594-13448885)
chr2 (21-309)||(13455065-13455353)
[»] chr6 (1 HSPs)
chr6 (18-256)||(12589823-12590061)
[»] chr4 (5 HSPs)
chr4 (18-258)||(48958429-48958669)
chr4 (18-306)||(48911999-48912287)
chr4 (18-139)||(48962695-48962816)
chr4 (58-133)||(48965736-48965811)
chr4 (248-309)||(48974340-48974401)
[»] chr8 (2 HSPs)
chr8 (18-101)||(12641135-12641218)
chr8 (170-258)||(12641287-12641375)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 12541207 - 12540916
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541207 aacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 12541108  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541107 gaaagcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 12541008  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12541007 agcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 12540916  T

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Target: chr5; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 28385856 - 28385565
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||||||    
T  28385856 aacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaaga 28385757  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    |||||||| || ||||||  || ||| || ||| |||||||||| ||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  28385756 gaaagcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttgga 28385657  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  28385656 agcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctgagaa 28385565  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 3417187 - 3417475
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    |||||||||||||||||||| | |||||||| ||| || ||   || |||||||||||||||||||||||| |||||   |||  || || || || |||    
T  3417187 aacttgatggagaagagtgtattcaacactatgagaaaaccgtaggtcacaaggcttggcatcttggtccatcttct---atttggagaaccactctaga 3417283  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    |||| ||||  ||||||| |||||||||| ||||||||| |||| |||  | |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3417284 gaaatcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttgga 3417383  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    ||| ||||  |||||| ||| |||||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||||    
T  3417384 agcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttgagaa 3417475  T

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Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 13440722 - 13440431
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    ||||||| |||||||||||  |||||||||| ||| || ||||||| ||||||| ||||||||| |||||||||||| ||||||  |||| |||||||||    
T  13440722 aacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattcaaga 13440623  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    |||||||| ||||||||| ||||||| || ||    |||||| | | | || |||||| ||||| || |||||||||| ||| |||||||||||||||||    
T  13440622 gaaagcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttgga 13440523  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    ||||| ||  |||||| ||| ||||||||||||||||| || |||||| |||||| |    |||||||||||||||||||||||||||||||    
T  13440522 agcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctgagaa 13440431  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 13448885 - 13448594
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    |||||||||||||||||||  | |||||||||||| || ||||||| ||||||| |||||||||||||||||||||| ||||||  ||||    ||||||    
T  13448885 aacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaaga 13448786  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    |||| ||| |||||||||||||||||||| || || |||||||  ||| || |||||| | ||| ||  ||||||||||||| |||||||||||||||||    
T  13448785 gaaatcagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttgga 13448686  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    ||||| ||  |||| | ||| ||||||||||| ||||| ||||| ||  |||||| |   ||||||||||||||||||||||||||||||||    
T  13448685 agcatcaactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaa 13448594  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 13455353 - 13455065
Alignment:
Q  21 ttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaa 120  Q
    ||||||||||||||||  |||||||||||||  || | || || ||||||| ||||||| |||||||||||||| |||||   | || | ||||||| ||    
T  13455353 ttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcagaaccgttcaagaaaa 13455254  T
Q  121 agcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 220  Q
    | ||| ||||||||| |||| |  || || ||  ||||||| ||| ||||||||  ||||| ||  ||||||||||||  ||||||||||||||||||||    
T  13455253 atcagagaggggaaacgaggtttttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagc 13455154  T
Q  221 ataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    || ||| |||  | | | ||||||||||||||||| |||||| || |||||| |   ||||| || ||||||||||||||||| |||||    
T  13455153 atcaattattcatctaataaacaactatatgagatggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttccggagaa 13455065  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 12589823 - 12590061
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    ||||||||||  ||||||||||| ||||||| ||| || |||| || |||||||||||||||||||||||| ||||| ||||||| ||||   |||||||    
T  12589823 aacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatcttggtccagcttctcttattcacaaaactgttcaaga 12589922  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    ||||||||  |||||||||||| ||| || ||  | ||| ||||  || || ||||| |||||  ||| || |||||| ||| |||||||||| |||||     
T  12589923 gaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttggg 12590022  T
Q  218 agcataaatcatttctttgacaaacaactatatgagatt 256  Q
    ||||||    ||||||  || |||||||| |||||||||    
T  12590023 agcatatgctatttctcagataaacaactttatgagatt 12590061  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 48958669 - 48958429
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    |||||||||| ||||||||  || |||||||| || ||  |||||| ||||||| |||||||||||||||  ||||| ||||||   ||| |||||||||    
T  48958669 aacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaaga 48958570  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    |||| ||| |||||||||||||  || ||  |||| ||| |  |  || || ||||||||||   ||  |  |||||||||| |||||||||| ||||||    
T  48958569 gaaatcagagaggggaaatgagaatgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttgga 48958470  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgc 258  Q
    ||||||  | |||| | ||| |||||||| |||||||||||    
T  48958469 agcatatgttatttatctgataaacaactttatgagattgc 48958429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 48911999 - 48912287
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    ||||||| || ||||||| | || ||||||||||| || | ||  | ||||| |||||||||||||||||| ||||| ||||||  | ||  ||||||||    
T  48911999 aacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcagaactattcaaga 48912098  T
Q  118 gaaagcagggaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttgga 217  Q
    ||| || | ||| ||| | ||| ||| || ||||| ||||||||   | || ||||| |||||  | |||| |||||| |||||||||||||| ||||||    
T  48912099 gaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttgga 48912198  T
Q  218 agcataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctga 306  Q
    |||  |  |||||| |  || |||||||| ||||||||||| ||||   | |||| |  | |||||  |||||||||||||||||||||    
T  48912199 agccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctga 48912287  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 48962816 - 48962695
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaaga 117  Q
    ||||||| || ||||||||  || ||||||||||| || ||||||| ||||||||||||||||| ||||||  |||| ||||||  |||  | |||||||    
T  48962816 aacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaaga 48962717  T
Q  118 gaaagcagggaggggaaatgag 139  Q
    ||||||||  |||||| |||||    
T  48962716 gaaagcagaaaggggacatgag 48962695  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 48965811 - 48965736
Alignment:
Q  58 cacgggccacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggagggga 133  Q
    |||||| || ||||||||||||||||||||| ||||| ||||||  ||||   ||||||||||||||| |||||||    
T  48965811 cacgggtcataaggcttggcatcttggtccagcttctcttattcgtaaaactgttcaagagaaagcagagagggga 48965736  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 48974401 - 48974340
Alignment:
Q  248 tatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcctgagaa 309  Q
    |||||||||||| ||||| |||||| |  |||||||| ||||||||||||||| || |||||    
T  48974401 tatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgtccccgagaa 48974340  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 12641135 - 12641218
Alignment:
Q  18 aacttgatggagaagagtgtgtccaacactacgaggaatccacgggccacaaggcttggcatcttggtccaacttcttttattc 101  Q
    |||||||||| ||||| ||  || ||||||| ||| || ||| |||  ||||||||||||||||||||||||||| | ||||||    
T  12641135 aacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattc 12641218  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 12641287 - 12641375
Alignment:
Q  170 tggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgc 258  Q
    |||||||| ||| |||||| ||| |||||| | |||||||||||||| |||||   | |||||| ||| |||||||| || ||||||||    
T  12641287 tggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgc 12641375  T

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