View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12813_low_1 (Length: 821)

Name: NF12813_low_1
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12813_low_1
NF12813_low_1
[»] chr1 (34 HSPs)
chr1 (374-575)||(30203987-30204189)
chr1 (394-587)||(51499879-51500073)
chr1 (448-587)||(51483042-51483181)
chr1 (612-794)||(51482814-51482996)
chr1 (612-776)||(51499672-51499836)
chr1 (486-570)||(51458491-51458575)
chr1 (27-109)||(37260913-37260995)
chr1 (39-108)||(35392105-35392174)
chr1 (48-104)||(45688325-45688381)
chr1 (227-306)||(37260912-37260991)
chr1 (309-377)||(30203882-30203950)
chr1 (223-306)||(5119026-5119109)
chr1 (59-105)||(28442950-28442996)
chr1 (31-112)||(5119028-5119109)
chr1 (643-776)||(30204353-30204486)
chr1 (43-104)||(45691053-45691114)
chr1 (43-103)||(45691196-45691256)
chr1 (43-103)||(45691338-45691398)
chr1 (204-255)||(10884465-10884516)
chr1 (61-112)||(35391505-35391556)
chr1 (223-306)||(37259311-37259394)
chr1 (226-271)||(2093846-2093891)
chr1 (31-104)||(3792560-3792633)
chr1 (31-104)||(39650196-39650269)
chr1 (58-109)||(2093837-2093889)
chr1 (29-105)||(33403130-33403206)
chr1 (31-110)||(11821160-11821239)
chr1 (228-275)||(35391506-35391553)
chr1 (30-105)||(48025555-48025630)
chr1 (230-275)||(2094364-2094409)
chr1 (31-76)||(5602944-5602989)
chr1 (29-82)||(42883106-42883159)
chr1 (212-305)||(42883738-42883831)
chr1 (59-104)||(50069239-50069284)
[»] chr5 (25 HSPs)
chr5 (375-570)||(27398531-27398727)
chr5 (426-570)||(43162761-43162905)
chr5 (635-776)||(27398358-27398499)
chr5 (452-571)||(20866758-20866877)
chr5 (635-794)||(20867004-20867163)
chr5 (59-109)||(17644600-17644650)
chr5 (227-275)||(17644599-17644647)
chr5 (179-275)||(40266539-40266635)
chr5 (223-294)||(1145153-1145224)
chr5 (204-255)||(17344809-17344860)
chr5 (225-275)||(6158940-6158989)
chr5 (227-305)||(7335534-7335612)
chr5 (48-109)||(1145158-1145219)
chr5 (48-109)||(7335550-7335611)
chr5 (39-106)||(16879875-16879943)
chr5 (31-82)||(3758922-3758973)
chr5 (223-270)||(6158131-6158178)
chr5 (30-105)||(11135740-11135815)
chr5 (179-238)||(17644532-17644591)
chr5 (61-104)||(30489753-30489796)
chr5 (258-312)||(3758916-3758970)
chr5 (179-237)||(7164265-7164323)
chr5 (59-105)||(30491799-30491845)
chr5 (43-104)||(19402004-19402065)
chr5 (307-373)||(27398799-27398867)
[»] scaffold0020 (1 HSPs)
scaffold0020 (452-571)||(135502-135621)
[»] chr3 (25 HSPs)
chr3 (393-507)||(36549945-36550061)
chr3 (20-105)||(19866722-19866807)
chr3 (31-104)||(6162687-6162760)
chr3 (615-716)||(36549803-36549904)
chr3 (31-107)||(30533880-30533956)
chr3 (31-109)||(54528956-54529034)
chr3 (54-111)||(2652934-2652991)
chr3 (30-103)||(53814567-53814640)
chr3 (39-111)||(3539676-3539748)
chr3 (58-110)||(47064891-47064943)
chr3 (30-110)||(50663874-50663954)
chr3 (40-107)||(8150178-8150245)
chr3 (31-98)||(40517534-40517601)
chr3 (25-95)||(4969869-4969939)
chr3 (59-105)||(15042010-15042056)
chr3 (59-105)||(34086844-34086890)
chr3 (31-104)||(35995137-35995210)
chr3 (28-105)||(39688756-39688833)
chr3 (59-104)||(53827666-53827711)
chr3 (30-105)||(7666966-7667041)
chr3 (204-295)||(8150180-8150271)
chr3 (25-104)||(44833464-44833543)
chr3 (62-104)||(2325566-2325608)
chr3 (61-103)||(11342920-11342962)
chr3 (233-275)||(53827666-53827708)
[»] chr4 (21 HSPs)
chr4 (30-111)||(38676938-38677019)
chr4 (30-110)||(36217869-36217949)
chr4 (30-110)||(38677661-38677741)
chr4 (39-112)||(54208188-54208261)
chr4 (30-105)||(36498905-36498980)
chr4 (232-295)||(38676950-38677013)
chr4 (232-306)||(36217870-36217944)
chr4 (59-105)||(40450959-40451005)
chr4 (31-104)||(33164510-33164583)
chr4 (60-104)||(36172194-36172238)
chr4 (214-306)||(54208180-54208272)
chr4 (232-275)||(24972421-24972464)
chr4 (184-255)||(37999482-37999553)
chr4 (59-105)||(24972418-24972464)
chr4 (43-109)||(27992304-27992370)
chr4 (29-95)||(37576541-37576607)
chr4 (28-94)||(47177909-47177975)
chr4 (56-109)||(27992140-27992193)
chr4 (223-264)||(27992299-27992340)
chr4 (43-104)||(36174584-36174645)
chr4 (59-104)||(46817437-46817482)
[»] chr7 (15 HSPs)
chr7 (31-110)||(26009369-26009448)
chr7 (179-306)||(28139386-28139513)
chr7 (179-238)||(149041-149100)
chr7 (34-110)||(26604172-26604248)
chr7 (30-104)||(38790883-38790958)
chr7 (228-306)||(26009369-26009447)
chr7 (28-110)||(26011952-26012034)
chr7 (30-92)||(28138758-28138820)
chr7 (28-86)||(42548158-42548216)
chr7 (27-76)||(25428727-25428776)
chr7 (225-309)||(19931485-19931569)
chr7 (61-104)||(48221703-48221746)
chr7 (59-97)||(20379680-20379718)
chr7 (233-275)||(48221703-48221745)
chr7 (31-104)||(1537251-1537324)
[»] chr6 (17 HSPs)
chr6 (16-63)||(18085647-18085694)
chr6 (221-306)||(806545-806630)
chr6 (29-109)||(806543-806623)
chr6 (30-109)||(14431474-14431553)
chr6 (30-104)||(14153353-14153427)
chr6 (55-107)||(7203953-7204005)
chr6 (223-308)||(7203946-7204031)
chr6 (30-109)||(14430943-14431022)
chr6 (179-230)||(807134-807185)
chr6 (29-112)||(2559616-2559699)
chr6 (227-306)||(14430944-14431023)
chr6 (233-275)||(14153385-14153427)
chr6 (59-105)||(17436064-17436110)
chr6 (61-107)||(23608457-23608503)
chr6 (230-275)||(23608458-23608503)
chr6 (59-104)||(32274212-32274257)
chr6 (59-104)||(35060900-35060945)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-105)||(24369-24454)
[»] chr8 (15 HSPs)
chr8 (31-104)||(33220792-33220865)
chr8 (30-109)||(24899066-24899145)
chr8 (24-104)||(5967242-5967322)
chr8 (29-108)||(1349220-1349299)
chr8 (669-794)||(4299922-4300053)
chr8 (184-307)||(27235476-27235599)
chr8 (31-105)||(43640977-43641051)
chr8 (218-275)||(24899056-24899113)
chr8 (31-103)||(14087850-14087922)
chr8 (30-110)||(23558982-23559062)
chr8 (31-79)||(26229068-26229116)
chr8 (28-79)||(37686613-37686664)
chr8 (205-306)||(1349196-1349297)
chr8 (233-314)||(33220792-33220873)
chr8 (30-103)||(35841396-35841469)
[»] chr2 (12 HSPs)
chr2 (204-307)||(28360025-28360127)
chr2 (43-110)||(37893007-37893074)
chr2 (27-118)||(2675142-2675233)
chr2 (53-104)||(11712980-11713031)
chr2 (28-104)||(12967267-12967344)
chr2 (67-104)||(12969269-12969306)
chr2 (31-95)||(22787999-22788063)
chr2 (261-308)||(13329610-13329657)
chr2 (59-105)||(11573661-11573707)
chr2 (31-104)||(8273245-8273318)
chr2 (31-104)||(18387241-18387314)
chr2 (26-95)||(20685001-20685070)
[»] scaffold0262 (2 HSPs)
scaffold0262 (31-109)||(8384-8462)
scaffold0262 (223-306)||(8384-8467)
[»] scaffold0163 (1 HSPs)
scaffold0163 (28-98)||(35773-35843)
[»] scaffold1763 (1 HSPs)
scaffold1763 (29-110)||(363-444)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 4e-65; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 374 - 575
Target Start/End: Original strand, 30203987 - 30204189
Alignment:
Q  374 tggtagcaacaaagtttagttaatgactcaagttaaaa-gaggcatcccaacggataatagaaaattatcttaactaattttacctacattaaaggacag 472  Q
    |||||||||||||||||||||||||| ||||||||||| | || |||||||| | |||||||||||||||||||| |||||||||| | |||||||| ||    
T  30203987 tggtagcaacaaagtttagttaatgaatcaagttaaaatggggaatcccaacagctaatagaaaattatcttaacaaattttacctgctttaaaggagag 30204086  T
Q  473 cagtggacatgcttgaactctctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaaatatcccagagagcgccgtctaaag 572  Q
    || | ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |    
T  30204087 caatagacatgcctgaactctctgaaatgcttctttaaatattcttccaatttaggtacatcctctctccgaaaaatatcccagagagcaccatctaagg 30204186  T
Q  573 aat 575  Q
    |||    
T  30204187 aat 30204189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 394 - 587
Target Start/End: Complemental strand, 51500073 - 51499879
Alignment:
Q  394 taatgactcaagttaaaa-gaggcatcccaacggataatagaaaattatcttaactaattttacctacattaaaggacagcagtggacatgcttgaactc 492  Q
    |||||||||||||||||| | ||||| ||| || | |||| |||||||||| |||||||||||||| | |||||||| || ||||||||||| |||||||    
T  51500073 taatgactcaagttaaaaaggggcattccagcgaaaaatataaaattatctaaactaattttacctgctttaaaggagaggagtggacatgcctgaactc 51499974  T
Q  493 tctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaaatatcccagagagcgccgtctaaagaatcacccccatttt 587  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||    
T  51499973 tctgaaatgcttctttaaatattcctccaacttaggaacatcctctctccgaaaaatatcccagagagcaccgtctaaagaatcgcccctatttt 51499879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 448 - 587
Target Start/End: Complemental strand, 51483181 - 51483042
Alignment:
Q  448 taattttacctacattaaaggacagcagtggacatgcttgaactctctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaa 547  Q
    ||||||||||| | |||||||| |||| ||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  51483181 taattttacctgctttaaaggagagcaatggacatgcctgaactctttgaaatgcttctttaaatattcctccaattcaggtacatcctctctccgaaaa 51483082  T
Q  548 atatcccagagagcgccgtctaaagaatcacccccatttt 587  Q
    |||||||| ||||| || ||||||||||||||||||||||    
T  51483081 atatcccaaagagcaccatctaaagaatcacccccatttt 51483042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 612 - 794
Target Start/End: Complemental strand, 51482996 - 51482814
Alignment:
Q  612 aagatgaattaccaagcacgtcgacattggtctctccatcctgattatgagcatgtaactcccttctgtcttgctcaaggtgcttttgcgtcagtttctt 711  Q
    ||||||||||| ||| || ||| || |||||||||||||| ||||||| | |||||| ||||||  |||||||||||||||||||||| ||||||||||     
T  51482996 aagatgaattatcaaacatgtcaacgttggtctctccatcttgattatcaccatgtagctccctcttgtcttgctcaaggtgcttttgtgtcagtttctc 51482897  T
Q  712 aatggcatgaataaccttaggctccaatttcacttcagaaatatgagtcaacacatttacctaaataaccaaattatgaaaga 794  Q
    |||||||  |||  ||| ||  | |||||||||||||| ||||||||||||||||||||||||||   ||||||||| |||||    
T  51482896 aatggcagcaatgccctcagatttcaatttcacttcagcaatatgagtcaacacatttacctaaaattccaaattataaaaga 51482814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 612 - 776
Target Start/End: Complemental strand, 51499836 - 51499672
Alignment:
Q  612 aagatgaattaccaagcacgtcgacattggtctctccatcctgattatgagcatgtaactcccttctgtcttgctcaaggtgcttttgcgtcagtttctt 711  Q
    ||||||||||| |||||  ||  ||| ||||||||||||||||||||| | |||||| ||||||  |||||||||||||||||||||  |||| ||||||    
T  51499836 aagatgaattatcaagcttgttaacagtggtctctccatcctgattatcaccatgtagctccctcttgtcttgctcaaggtgcttttctgtcaatttctt 51499737  T
Q  712 aatggcatgaataaccttaggctccaatttcacttcagaaatatgagtcaacacatttacctaaa 776  Q
    |||||||  || | |   ||  | |||||||||||||| ||||||||||||||||||||||||||    
T  51499736 aatggcagcaagaccaacagagttcaatttcacttcagcaatatgagtcaacacatttacctaaa 51499672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 570
Target Start/End: Complemental strand, 51458575 - 51458491
Alignment:
Q  486 tgaactctctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaaatatcccagagagcgccgtctaa 570  Q
    |||||||||||||||||||||  | |||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  51458575 tgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaa 51458491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 37260995 - 37260913
Alignment:
Q  27 ataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    ||||||||| | |||||||| ||||||||||||| ||||| ||||||||| || |||||| |||||| |||||||||||||||    
T  37260995 ataagaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaactcacg 37260913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 35392174 - 35392105
Alignment:
Q  39 ctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcac 108  Q
    |||||||| ||||  ||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  35392174 ctctttacccaaattgttttgctcattcccaaagtaaatgttcaaaatacttctacgcatgttaactcac 35392105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 45688325 - 45688381
Alignment:
Q  48 caaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  45688325 caaatggttctgctcattcccaaagtaaaagttcaaaatgcccctacgcatgttaac 45688381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 37260912 - 37260991
Alignment:
Q  227 gcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    |||||||||||||||| ||||||  |||| ||||||||||||| ||||||| |||||||||||| |||| |||| |||||    
T  37260912 gcgtgagttaacatgcataggggcattttggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataattc 37260991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 30203882 - 30203950
Alignment:
Q  309 aaaataaagcataagccaagacttcagtcaaataaggaaaaggagagatagtatcaattttatcatggt 377  Q
    |||||||||||||||| |||||||   |||| || |||||||||||||||| |||||||||||||||||    
T  30203882 aaaataaagcataagctaagacttagatcaagtagggaaaaggagagatagcatcaattttatcatggt 30203950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 5119026 - 5119109
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    |||| |||||||||| ||| ||||  || ||||||||||||||||| |||||| | ||||||||||||||||| |||| |||||    
T  5119026 actaacgtgagttaatatgtgtagcagtattttagacatttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 28442950 - 28442996
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  28442950 gctcattcccaaagtaaaagttgaaaatgcccctacgcatgttaact 28442996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 5119109 - 5119028
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtta 112  Q
    ||||||| |||||||  |||||||||||||||||||| |||||||| ||  |||||||  |||| ||| |||||||||||||    
T  5119109 gaattctgctctttatccaaacggttttgctcattcctaaagtaaatgtctaaaatactgctacacatattaactcacgtta 5119028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 643 - 776
Target Start/End: Original strand, 30204353 - 30204486
Alignment:
Q  643 ctctccatcctgattatgagcatgtaactcccttctgtcttgctcaaggtgcttttgcgtcagtttcttaatggcatgaataaccttaggctccaatttc 742  Q
    |||||||||| |||||| | ||  || ||||||  |||||||||||||||| ||||   || || | |||||||||| ||| | |||||  ||||| |||    
T  30204353 ctctccatcccgattatcaccaattagctccctcttgtcttgctcaaggtgattttttttctgtgttttaatggcattaatgatcttagaatccaacttc 30204452  T
Q  743 acttcagaaatatgagtcaacacatttacctaaa 776  Q
    ||||||| |||||||||||  |||||||||||||    
T  30204453 acttcagtaatatgagtcagaacatttacctaaa 30204486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 45691114 - 45691053
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||| ||||||| |||||||||    
T  45691114 ttactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaac 45691053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 45691256 - 45691196
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaa 103  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||| ||||||| ||||||||    
T  45691256 ttactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 45691398 - 45691338
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaa 103  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||| ||||||| ||||||||    
T  45691398 ttactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 10884465 - 10884516
Alignment:
Q  204 taactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgtttt 255  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||| ||||    
T  10884465 taactcacgcaaatttaacactagcgtgagttaacatgtgtaggggtatttt 10884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 35391505 - 35391556
Alignment:
Q  61 tcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtta 112  Q
    |||||||||||||||| || |||||||| | |||||||||||||||||||||    
T  35391505 tcattcccaaagtaaatgtccaaaatactcatacgcatgttaactcacgtta 35391556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 37259394 - 37259311
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    |||||||||| ||||||| |||||| |  ||| ||||||||||||||| |||| | |||||||||| |||||| |||| |||||    
T  37259394 actagcgtgaattaacatacgtaggagcatttcagacatttactttggaaatgagcaaaaccgtttagataaagagcataattc 37259311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 2093891 - 2093846
Alignment:
Q  226 agcgtgagttaacatgcgtaggggtgttttagacatttactttggg 271  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||    
T  2093891 agcgtgagttaacatgcgtaggggtattttggacatttattttggg 2093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 3792560 - 3792633
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| ||||  |||| ||||||| ||||||||||||| |||||| ||| |||||||||||||    
T  3792560 gaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaac 3792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 39650196 - 39650269
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| ||||  ||| ||||| ||||||||| |||||||| || |||||| |||||||||||||||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaac 39650269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 2093837 - 2093889
Alignment:
Q  58 tgctcatt-cccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||||||| |||||| |||| || |||||||||||||||||||||||||||||    
T  2093837 tgctcattacccaaaataaatgtccaaaatacccctacgcatgttaactcacg 2093889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 33403206 - 33403130
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    ||||||| | ||| |||| ||||| || | ||||||| |||||||||||||  ||||| ||||||||||||||||||    
T  33403206 aagaattatgctcattacccaaacagtatcgctcatttccaaagtaaaagtcgaaaatgcccctacgcatgttaact 33403130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 11821160 - 11821239
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    ||||||| ||| |||  |||| ||||| | ||||||||||||||||||| |||||| | |||| ||||||||||| ||||    
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaacttacgt 11821239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 35391553 - 35391506
Alignment:
Q  228 cgtgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||    
T  35391553 cgtgagttaacatgcgtatgagtattttggacatttactttgggaatg 35391506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 48025555 - 48025630
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||| | ||| |||| ||||| || | |||||||||||||||| ||||| ||||| ||| ||||||||||||||    
T  48025555 agaattatgctcgttacccaaacagtatcgctcattcccaaagtagaagttgaaaatgcccttacgcatgttaact 48025630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 2094364 - 2094409
Alignment:
Q  230 tgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||||| |||||||||| | ||||||||||||||||||| ||||    
T  2094364 tgagttaatatgcgtagggatattttagacatttactttggaaatg 2094409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 5602944 - 5602989
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaa 76  Q
    ||||||| |||||||| |||| || |||||||||||||||||||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaa 5602989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 42883106 - 42883159
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttca 82  Q
    ||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||    
T  42883106 aagaattctgctctttacccaaacagttttgctcatacctaaagtaaatgttca 42883159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 42883738 - 42883831
Alignment:
Q  212 gcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaatt 305  Q
    |||||||||| ||| ||||||||||||||| |||||| | |||| |||||||| ||| | |||| | |||||| ||| | |||| |||| ||||    
T  42883738 gcaaatttaacacttgcgtgagttaacatgtgtagggatattttggacatttattttagaaatgagcaaaaccatttagctaaagagcataatt 42883831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 50069284 - 50069239
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||||| || |||||| ||||| |||||||||||    
T  50069284 gctcattcccaaagtaaatgtccaaaatgcccctgcgcatgttaac 50069239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 375 - 570
Target Start/End: Complemental strand, 27398727 - 27398531
Alignment:
Q  375 ggtagcaacaaagtttagttaatgactcaagttaaaagagg-catcccaacggataatagaaaattatcttaactaattttacctacattaaaggacagc 473  Q
    ||||||||| ||||||  |||||||||| |||||| || || ||||| ||| ||| ||||||||||||   |||||| ||||||| |  ||||||| |||    
T  27398727 ggtagcaactaagtttcattaatgactccagttaacagggggcatccaaacagatgatagaaaattataacaactaactttacctcctctaaaggagagc 27398628  T
Q  474 agtggacatgcttgaactctctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaaatatcccagagagcgccgtctaa 570  Q
    | ||||||||| |||||||||||||||||||||| | |||||||| ||||  |||||||||||||||||||||||||||||| ||||| || |||||    
T  27398627 aatggacatgcctgaactctctgaaatgcttcttcagatattcctgcaatgcaggtacatcctctctccgaaaaatatcccaaagagcaccatctaa 27398531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 426 - 570
Target Start/End: Complemental strand, 43162905 - 43162761
Alignment:
Q  426 gataatagaaaattatcttaactaattttacctacattaaaggacagcagtggacatgcttgaactctctgaaatgcttcttgaaatattcctccaattt 525  Q
    |||||| ||||||| ||| | || ||||||||| | ||||||||| ||| | ||||||  ||||||||||||||||||| || | |||||||| ||||||    
T  43162905 gataatggaaaattgtctaagctgattttacctgctttaaaggactgcaattgacatgtctgaactctctgaaatgcttttttatatattccttcaattt 43162806  T
Q  526 aggtacatcctctctccgaaaaatatcccagagagcgccgtctaa 570  Q
     ||||||||||||||||||||||||||||||||||| || |||||    
T  43162805 gggtacatcctctctccgaaaaatatcccagagagcaccttctaa 43162761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 635 - 776
Target Start/End: Complemental strand, 27398499 - 27398358
Alignment:
Q  635 acattggtctctccatcctgattatgagcatgtaactcccttctgtcttgctcaaggtgcttttgcgtcagtttcttaatggcatgaataaccttaggct 734  Q
    ||||||||||||||||||||| ||| | |||||| ||||||  ||||||||||||||||||||||  ||| ||||||||| || | | ||  |  | | |    
T  27398499 acattggtctctccatcctgaatatcaccatgtagctccctcttgtcttgctcaaggtgcttttgtttcaatttcttaattgcgtcactactcacacgat 27398400  T
Q  735 ccaatttcacttcagaaatatgagtcaacacatttacctaaa 776  Q
    ||| |||   ||||| ||||||||||||||||||||||||||    
T  27398399 ccagttttgattcagcaatatgagtcaacacatttacctaaa 27398358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 571
Target Start/End: Original strand, 20866758 - 20866877
Alignment:
Q  452 tttacctacattaaaggacagcagtggacatgcttgaactctctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaaatat 551  Q
    ||||||| | |||||||| | || | || |||| |||||||||   |||||||||| | |||||||| |||||| || ||||||||||||||||||||||    
T  20866758 tttacctgctttaaaggagaacaatagatatgcctgaactctccagaatgcttcttcagatattccttcaatttcggcacatcctctctccgaaaaatat 20866857  T
Q  552 cccagagagcgccgtctaaa 571  Q
    ||||| |||| || ||||||    
T  20866858 cccagtgagcaccatctaaa 20866877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 635 - 794
Target Start/End: Original strand, 20867004 - 20867163
Alignment:
Q  635 acattggtctctccatcctgattatgagcatgtaactcccttctgtcttgctcaaggtgcttttgcgtcagtttcttaatggcatgaataaccttaggct 734  Q
    ||||||||||||||||| ||||||| | |||||| ||||||  |||||||||||||||||||||  || | ||| ||||| |||  |||   |  ||  |    
T  20867004 acattggtctctccatcttgattatcaccatgtagctccctcttgtcttgctcaaggtgcttttctgttaattttttaattgcagtaatgctcacagttt 20867103  T
Q  735 ccaatttcacttcagaaatatgagtcaacacatttacctaaataaccaaattatgaaaga 794  Q
    ||| || ||||| || || ||||||||||||||||||||||| | ||||||||| |||||    
T  20867104 ccagttccactttagcaacatgagtcaacacatttacctaaaaagccaaattatcaaaga 20867163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 17644650 - 17644600
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  17644650 gctcattcccaaagtaaatgtccaaaatacccctacgcatgttaattcacg 17644600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 17644599 - 17644647
Alignment:
Q  227 gcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  17644599 gcgtgaattaacatgcgtaggggtattttggacatttactttgggaatg 17644647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 40266539 - 40266635
Alignment:
Q  179 gtgacttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    ||||||||||||||| |||||||  ||||| |||||||||||| | ||||||||||||||   || | |||  |||| | |||||||||||||||||    
T  40266539 gtgacttaagtcacgtagcgtgagttaactcacgcaaatttaacattagcgtgagttaactcacgcatgggcattttggtcatttactttgggaatg 40266635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 1145224 - 1145153
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataa 294  Q
    |||||||||||||||||||||||| ||  |||| | ||||||||||||||||| |  |||| ||||||||||    
T  1145224 actagcgtgagttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttggataa 1145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 17344809 - 17344860
Alignment:
Q  204 taactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgtttt 255  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||| ||||    
T  17344809 taactcacgcaaaattaacactagcgtgagttaacatgcgtaggggtatttt 17344860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 6158940 - 6158989
Alignment:
Q  225 tagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  6158940 tagcgtgagttaacatacgtaggg-tattttagacatttactttgggaatg 6158989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 7335612 - 7335534
Alignment:
Q  227 gcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaatt 305  Q
    |||||||||||||||  ||||||| |||| | |||||| ||| |||||| | ||||||||||||||||| |||| ||||    
T  7335612 gcgtgagttaacatgtataggggtattttggtcatttattttaggaatgagcaaaaccgtttggataaaaagcagaatt 7335534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 1145158 - 1145219
Alignment:
Q  48 caaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    ||||| |||| |||||||||||||||||| |  |||||| || |||||||||||||||||||    
T  1145158 caaacagtttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaactcacg 1145219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 7335550 - 7335611
Alignment:
Q  48 caaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||||||||||||||||||| ||| |||| |  |||||||||||||  ||||||||||||||    
T  7335550 caaacggttttgctcattcctaaaataaatgaccaaaatacccctatacatgttaactcacg 7335611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 16879943 - 16879875
Alignment:
Q  39 ctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccc-tacgcatgttaactc 106  Q
    |||||||| ||||| ||||||| |||||| ||||||||  | ||||||||||| |||||||||||||||    
T  16879943 ctctttacccaaactgttttgcacattcctaaagtaaatatccaaaataccccttacgcatgttaactc 16879875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 3758922 - 3758973
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttca 82  Q
    ||||||| ||||||||  |||||||||| ||||||||||||||||| |||||    
T  3758922 gaattctgctctttaccaaaacggttttactcattcccaaagtaaatgttca 3758973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 6158178 - 6158131
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacatttactttgg 270  Q
    |||||||||||||||||||||||||||| |||  | ||||||||||||    
T  6158178 actagcgtgagttaacatgcgtaggggtatttcggtcatttactttgg 6158131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 11135740 - 11135815
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||| | |||||||| |||| | ||| ||||||| ||||| |||| |  |||||||||||||||||||||||||    
T  11135740 agaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaact 11135815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 17644532 - 17644591
Alignment:
Q  179 gtgacttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaac 238  Q
    |||| ||||||||||||||||||  ||||| | | |||||||| ||||||||||||||||    
T  17644532 gtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactagcgtgagttaac 17644591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 30489753 - 30489796
Alignment:
Q  61 tcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  30489753 tcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaac 30489796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 3758970 - 3758916
Alignment:
Q  258 acatttactttgggaatgggtaaaaccgtttggataaatagcaaaattcataaaa 312  Q
    |||||||||||||||||| |||||||||||| | |||| |||| |||||| ||||    
T  3758970 acatttactttgggaatgagtaaaaccgttttggtaaagagcagaattcaaaaaa 3758916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 7164323 - 7164265
Alignment:
Q  179 gtgacttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaa 237  Q
    |||||||||||||||| ||||||  ||||| | |||||||||| | |||||||||||||    
T  7164323 gtgacttaagtcacgcggcgtgaattaactcatgcaaatttaacattagcgtgagttaa 7164265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 30491845 - 30491799
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||  |||||  |||||||||||||||||    
T  30491845 gctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaact 30491799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 19402065 - 19402004
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||| |||| |||||  ||||||| |||||||||||| |||||| ||| |||||||||||||    
T  19402065 ttacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaac 19402004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 27398867 - 27398799
Alignment:
Q  307 ataaaataaagcataagccaagacttcagtcaaataaggaaaagga--gagatagtatcaattttatca 373  Q
    |||||||||||||||||| |||| ||  |||||||| ||||||| |  |||||||| ||||||||||||    
T  27398867 ataaaataaagcataagctaagaattaggtcaaatagggaaaagcaatgagatagtgtcaattttatca 27398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 452 - 571
Target Start/End: Original strand, 135502 - 135621
Alignment:
Q  452 tttacctacattaaaggacagcagtggacatgcttgaactctctgaaatgcttcttgaaatattcctccaatttaggtacatcctctctccgaaaaatat 551  Q
    ||||||| | |||||||| |||| | || |||| |||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||    
T  135502 tttacctgctttaaaggagagcaatagatatgcctgaactctctgaaatgcttcatcagatattccttcaatttaggtacatcctctctccgaaaaatat 135601  T
Q  552 cccagagagcgccgtctaaa 571  Q
    |||||||||| || ||||||    
T  135602 cccagagagcaccatctaaa 135621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 393 - 507
Target Start/End: Complemental strand, 36550061 - 36549945
Alignment:
Q  393 ttaatgactcaagttaaaa-gaggcatcccaacggataatagaaaattatcttaactaattttacctacattaaaggacagcagtggacatgcttgaact 491  Q
    |||||| |||||||||||| | |||||  || |||||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||| ||||||    
T  36550061 ttaatggctcaagttaaaaaggggcatttcagcggataatagaaaattatctaaacaaattttacctgctttaaaggagagcagtggacatgcctgaact 36549962  T
Q  492 c-tctgaaatgcttctt 507  Q
    | |||||||||||||||    
T  36549961 cttctgaaatgcttctt 36549945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 19866722 - 19866807
Alignment:
Q  20 aaataaaataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||| ||||||||||| ||| |||| ||||| || | |||||||||||||||||||||  ||||| ||||||||||||||||||    
T  19866722 aaataagataagaattctgctcattacccaaacagtatcgctcattcccaaagtaaaagtcaaaaatgcccctacgcatgttaact 19866807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 6162760 - 6162687
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| |||| ||||  ||||||||||||||||||||| |||||| |||||||||||||||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 6162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 615 - 716
Target Start/End: Complemental strand, 36549904 - 36549803
Alignment:
Q  615 atgaattaccaagcacgtcgacattggtctctccatcctgattatgagcatgtaactcccttctgtcttgctcaaggtgcttttgcgtcagtttcttaat 714  Q
    |||||||| |||||| ||  ||| ||||||||||||||||||||| | |||||| | ||||  | ||||||||||||||||||||  ||| |||||||||    
T  36549904 atgaattatcaagcatgttaacagtggtctctccatcctgattatcaccatgtagcaccctcttatcttgctcaaggtgcttttgtatcaatttcttaat 36549805  T
Q  715 gg 716  Q
    ||    
T  36549804 gg 36549803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 30533956 - 30533880
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactca 107  Q
    ||||||| |||||||| | ||||||||||||||||  |||||||||  | |||||||||||||| ||||||||||||    
T  30533956 gaattctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaatacccctacacatgttaactca 30533880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 54529034 - 54528956
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    ||||||| ||||||||  ||| | |||||||||||| ||| ||||| || |||||||||||||| ||||||||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaactcacg 54528956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 2652991 - 2652934
Alignment:
Q  54 gttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtt 111  Q
    |||||||  |||||||||||||| | |||||||||||||||||||||||| |||||||    
T  2652991 gttttgcctattcccaaagtaaatgatcaaaatacccctacgcatgttaattcacgtt 2652934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 53814640 - 53814567
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaa 103  Q
    |||||||| ||| |||| |||| || || |||||||||||||||||| | ||||||| ||||||||||||||||    
T  53814640 agaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaa 53814567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 3539676 - 3539748
Alignment:
Q  39 ctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtt 111  Q
    |||||||  |||| ||||||||||||| ||||| |||| | |||||||| |||||| ||||||||||||||||    
T  3539676 ctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccctacacatgttaactcacgtt 3539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 47064891 - 47064943
Alignment:
Q  58 tgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||| ||||    
T  47064891 tgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaacttacgt 47064943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 50663874 - 50663954
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||||||| ||||| || |||| | ||| ||||||||||||||||||    |||||| |||||||||||||||||||||||    
T  50663874 agaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaactcacgt 50663954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 8150178 - 8150245
Alignment:
Q  40 tctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactca 107  Q
    ||||||| |||||| |||||||||||||||||| ||  |  ||||||||||||||| |||||||||||    
T  8150178 tctttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactca 8150245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 40517601 - 40517534
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcat 98  Q
    ||||||| |||||||| |||||||||| ||||||||| |||||||| |  ||| ||||||||||||||    
T  40517601 gaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgaccaagatacccctacgcat 40517534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 4969869 - 4969939
Alignment:
Q  25 aaataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacg 95  Q
    |||| |||||||| ||| |||| |||| ||||  |||||||||||||||||||||  ||||||||||||||    
T  4969869 aaattagaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacg 4969939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 15042056 - 15042010
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||    
T  15042056 gctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaact 15042010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 34086890 - 34086844
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||    
T  34086890 gctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaact 34086844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 35995137 - 35995210
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| |||| |||| ||||| ||| ||||||||||||| ||||| ||||| |||||||||||    
T  35995137 gaattctactcattacccaaatggttctgctccttcgcaaagtaaaagtttaaaatgccccttcgcatgttaac 35995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 39688833 - 39688756
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||| ||  ||||  |||| || |||||||||| ||||||||||||  ||||||||||||| ||||||||||    
T  39688833 taagaattctgctgattacttaaacagtattgctcattctcaaagtaaaagtcgaaaatacccctacacatgttaact 39688756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 53827711 - 53827666
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||||| || |||||| |||||||||||||||||    
T  53827711 gctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaac 53827666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 7667041 - 7666966
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||| | ||| |||| ||||| || | ||||||||||||| |||||||  ||||| ||||||||||||||||||    
T  7667041 agaattttgctcattacccaaacagtatcgctcattcccaaaataaaagtcaaaaatgcccctacgcatgttaact 7666966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 8150271 - 8150180
Alignment:
Q  204 taactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaa 295  Q
    ||||| ||||| |||||| | |||| ||||||||||| ||||||||| |||| | || || ||||||||||| | |||| ||||||| ||||    
T  8150271 taactcacgcatatttaacattagcatgagttaacatacgtaggggtattttggtcagtttctttgggaatgagcaaaaacgtttgggtaaa 8150180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 44833464 - 44833543
Alignment:
Q  25 aaataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||||||||| ||| |||| |||| ||||  | | ||| ||||||||||||| |||||| ||||||||||| |||||    
T  44833464 aaataagaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaac 44833543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 2325608 - 2325566
Alignment:
Q  62 cattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||||||||||||||| |||||  ||||||||||||||||    
T  2325608 cattcccaaagtaaaagtttaaaatgtccctacgcatgttaac 2325566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 11342920 - 11342962
Alignment:
Q  61 tcattcccaaagtaaaagttcaaaatacccctacgcatgttaa 103  Q
    ||||||||||||||||||| |||||  ||||||||||||||||    
T  11342920 tcattcccaaagtaaaagtccaaaaagcccctacgcatgttaa 11342962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 53827666 - 53827708
Alignment:
Q  233 gttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||||||||||||||  |||| |||||||||||||||||||    
T  53827666 gttaacatgcgtaggggcattttggacatttactttgggaatg 53827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 38676938 - 38677019
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtt 111  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||| || ||||||||| ||||||||||||||| |||||    
T  38676938 agaattctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaatacctctacgcatgttaacttacgtt 38677019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 36217869 - 36217949
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||||||| |||||||| |||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  36217869 agaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacttacgt 36217949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 38677741 - 38677661
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||||||| |||||||| |||||| ||||| ||||||||||||||||  ||||||||| |||| |||||||||||| ||||    
T  38677741 agaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaacttacgt 38677661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 54208188 - 54208261
Alignment:
Q  39 ctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtta 112  Q
    |||||||  |||| |||||||||||||||||||||||| | ||||||||||||||| || ||||||| ||||||    
T  54208188 ctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacgtta 54208261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 36498905 - 36498980
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||| ||| |||| ||||| || | |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  36498905 agaattctgctcattactcaaacagtatcgctcattcccaaagtaaaagttgaaaatgcccctatgcatgttaact 36498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 38677013 - 38676950
Alignment:
Q  232 agttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaa 295  Q
    ||||||||||||||| ||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  38677013 agttaacatgcgtagaggtattttggacatttattttgggaatgagcaaaaccgtttggataaa 38676950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 36217944 - 36217870
Alignment:
Q  232 agttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    ||||||||||||||||||  |||| ||| ||||||||||||||| |||||||| ||||  |||| |||| |||||    
T  36217944 agttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaattc 36217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 40450959 - 40451005
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||    
T  40450959 gctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaact 40451005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 33164583 - 33164510
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| |||| ||||  |||||||| ||||||||| || |||||| |||||||||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaac 33164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 36172194 - 36172238
Alignment:
Q  60 ctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||    
T  36172194 ctcattcccaaagtaaaagtccaaaatacccctatgtatgttaac 36172238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 54208272 - 54208180
Alignment:
Q  214 aaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    ||||| || |||| ||| ||||||| || |||||||| ||||   ||||||||||||||||| | |||||| |||||||||| |||| |||||    
T  54208272 aaattcaacactaacgtaagttaacttgagtaggggtattttgatcatttactttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 24972464 - 24972421
Alignment:
Q  232 agttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||    
T  24972464 agttaacatgcgtaggggtgtttttgacttttactttaggaatg 24972421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 37999482 - 37999553
Alignment:
Q  184 ttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgtttt 255  Q
    |||| |||||||||||||  ||| | ||||  |||||| ||||||||||||||||||||||| |||| ||||    
T  37999482 ttaactcacgcagcgtgaattaagtcacgctgatttaacactagcgtgagttaacatgcgtaagggtatttt 37999553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 24972418 - 24972464
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    ||||||||| |||||||||||  |||| |||||||||||||||||||    
T  24972418 gctcattcctaaagtaaaagtcaaaaacacccctacgcatgttaact 24972464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 27992370 - 27992304
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||| |||| || |||||||||| | ||| |||| || ||||||||||||| |||||||||||||||    
T  27992370 ttacccaaatggatttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaactcacg 27992304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 37576541 - 37576607
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacg 95  Q
    ||||||||| ||| |||| ||||||||||||||| || |||||||||| || || | ||||||||||    
T  37576541 aagaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtccatattacccctacg 37576607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 47177909 - 47177975
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctac 94  Q
    |||||||||| ||||| || |||||||||| |||| |||||||||||||    ||||||||||||||    
T  47177909 taagaattctgctcttgacccaaacggtttcgctcgttcccaaagtaaattaccaaaatacccctac 47177975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 27992140 - 27992193
Alignment:
Q  56 tttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    ||||||||||||||||||||| |  | |||| |||||| |||||||||||||||    
T  27992140 tttgctcattcccaaagtaaatgaccgaaatgcccctaagcatgttaactcacg 27992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 27992299 - 27992340
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacattta 264  Q
    |||||||||||||||||||| ||||||| |||| ||||||||    
T  27992299 actagcgtgagttaacatgcataggggtattttggacattta 27992340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 36174645 - 36174584
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||| |||| |||||  |||||||||||||||||| | |||||| || ||||||||||||||    
T  36174645 ttactcaaatggtttcactcattcccaaagtaaaaatccaaaatgccactacgcatgttaac 36174584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 46817482 - 46817437
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||||  |||||||| ||||||||| |||||||||||||||||    
T  46817482 gctcattcttaaagtaaatgttcaaaatgcccctacgcatgttaac 46817437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 26009369 - 26009448
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||| |  |||||||  |||||||||||||||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacgt 26009448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 28139386 - 28139513
Alignment:
Q  179 gtgacttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggt 278  Q
    |||| |||| ||||||||||| || ||||| | |||||||||| ||||||||||||||||   || |||||  |||| | |||||||||||||||||||     
T  28139386 gtgagttaactcacgcagcgtaacttaactcatgcaaatttaacactagcgtgagttaactcacgcaggggcattttggtcatttactttgggaatgggc 28139485  T
Q  279 aaaaccgtttggataaatagcaaaattc 306  Q
    ||| || ||||| |||| |||| |||||    
T  28139486 aaatccatttgggtaaaaagcagaattc 28139513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 149100 - 149041
Alignment:
Q  179 gtgacttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaac 238  Q
    ||||||||||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||    
T  149100 gtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactagcgtgagttaac 149041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 26604248 - 26604172
Alignment:
Q  34 ttctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||| ||| |||| |||| ||||  |||||||| ||||||||||||| ||||| |||||||||||||||||| ||||    
T  26604248 ttctgctcattactcaaatggttccgctcattctcaaagtaaaagtttaaaatgcccctacgcatgttaacttacgt 26604172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 38790883 - 38790958
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattc-ccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||| ||| |||  |||| ||||| |||||||  ||||||||||||| ||||||||||||||||||||||||    
T  38790883 agaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaac 38790958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 26009447 - 26009369
Alignment:
Q  228 cgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    ||||||||||||||||||||  | |||| | ||||||||||||||||| | |||| ||||||| |||| |||| |||||    
T  26009447 cgtgagttaacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattc 26009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 26012034 - 26011952
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||||||||| |||||||| |||||| ||||  |||||| ||||||||| |  ||||||||| ||| ||||||||||| ||||    
T  26012034 taagaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaacttacgt 26011952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 28138758 - 28138820
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccct 92  Q
    |||||||| |||||||| |||| | |||||||||||||||||||||| |  ||||||||||||    
T  28138758 agaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 42548158 - 42548216
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaat 86  Q
    |||||||||| ||| |||| ||||  |||||||||||||||||||||||||| ||||||    
T  42548158 taagaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 25428727 - 25428776
Alignment:
Q  27 ataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaa 76  Q
    ||||||||| | |||||||| ||||||||| |||||||||||||||||||    
T  25428727 ataagaattttgctctttacccaaacggttctgctcattcccaaagtaaa 25428776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 19931569 - 19931485
Alignment:
Q  225 tagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattcata 309  Q
    ||||||||||||| ||||||| | || |||||| ||||||||||| ||| | | |||||| ||| |||||| |||| ||||||||    
T  19931569 tagcgtgagttaatatgcgtatgtgtattttagtcatttactttgagaacgagcaaaaccatttagataaagagcagaattcata 19931485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 48221746 - 48221703
Alignment:
Q  61 tcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||| || ||||||||||||||||||| ||||    
T  48221746 tcattcccaaagtaaatgtccaaaatacccctacgcatgctaac 48221703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 20379718 - 20379680
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgca 97  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  20379718 gctcattcccaaagtaaaagtccaaaatgcccctacgca 20379680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 48221703 - 48221745
Alignment:
Q  233 gttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||| ||||||||||||| |||| |||||||||||||||||||    
T  48221703 gttagcatgcgtaggggtattttggacatttactttgggaatg 48221745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 1537324 - 1537251
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| ||||| || | | |||||| ||||||||| ||||||||| ||||| |||||||||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaac 1537251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18085694 - 18085647
Alignment:
Q  16 agacaaataaaataagaattctcctctttacgcaaacggttttgctca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18085694 agacaaataaaataagaattctcctctttacgcaaacggttttgctca 18085647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 806630 - 806545
Alignment:
Q  221 atactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    |||||||||||||||||||| |||||| || |||||||||||||||||| ||||| | ||||| |||||| |||| |||| |||||    
T  806630 atactagcgtgagttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaattc 806545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 806543 - 806623
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    ||||||||| |||||||| ||||| ||||||||||||| ||||||||| ||  ||||||| |||||| |||||||||||||    
T  806543 aagaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaactcacg 806623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 14431553 - 14431474
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||||||| |||||||| |||||||||||| ||||||| |||||||| |||||||| | ||||||  |||||||||||||    
T  14431553 agaattctactctttacacaaacggttttgttcattcctaaagtaaatgttcaaaacatccctacatatgttaactcacg 14431474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 14153353 - 14153427
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||| ||| |||| |||| | |||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  14153353 agaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 7204005 - 7203953
Alignment:
Q  55 ttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactca 107  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  7204005 ttttgctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaactca 7203953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 7203946 - 7204031
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattcat 308  Q
    |||||| ||||||||||||||||||||| ||||   ||||||||||||||| | | |||| | |||||| |||||||| |||||||    
T  7203946 actagcatgagttaacatgcgtaggggtattttgatcatttactttgggaacgagcaaaatcatttggaaaaatagcagaattcat 7204031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 14430943 - 14431022
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||||||| || |||||  |||||||| |||||||| | |||||||| ||| |||||  |||||||||||||||||||||    
T  14430943 agaattctgctatttacctaaacggttctgctcatttctaaagtaaatgtttaaaatgtccctacgcatgttaactcacg 14431022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 807134 - 807185
Alignment:
Q  179 gtgacttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgt 230  Q
    |||||||||||||||||| ||||  ||||| |||||||||||| ||||||||    
T  807134 gtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactagcgt 807185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 2559699 - 2559616
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgtta 112  Q
    ||||||| | |||||||| |||||| |||||||| ||||||||||||| ||||| | | | ||||||   ||||||||||||||    
T  2559699 aagaattttgctctttacccaaacgattttgctcgttcccaaagtaaatgttcatattgctcctacgtgagttaactcacgtta 2559616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 14431023 - 14430944
Alignment:
Q  227 gcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    ||||||||||||||||||||||   ||||| ||||||||||| | |||| | | |||||||| | ||||||||| |||||    
T  14431023 gcgtgagttaacatgcgtagggacattttaaacatttactttagaaatgagcagaaccgtttaggtaaatagcagaattc 14430944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 14153427 - 14153385
Alignment:
Q  233 gttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||||||||||||||||| |||| | |||||||||||||||||    
T  14153427 gttaacatgcgtaggggtattttggtcatttactttgggaatg 14153385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 17436064 - 17436110
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||    
T  17436064 gctcattcccaaagtaaaagtctaaaatgcctctacgcatgttaact 17436110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 23608457 - 23608503
Alignment:
Q  61 tcattcccaaagtaaaagttcaaaatacccctacgcatgttaactca 107  Q
    ||||||||||| |||||||  |||||| |||||||||||||||||||    
T  23608457 tcattcccaaaataaaagtctaaaatatccctacgcatgttaactca 23608503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 23608503 - 23608458
Alignment:
Q  230 tgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    ||||||||||||||||||| | |||||||| |||| ||||||||||    
T  23608503 tgagttaacatgcgtagggatattttagacttttattttgggaatg 23608458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 32274212 - 32274257
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||||| | || |||| |||||||||||||||||    
T  32274212 gctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaac 32274257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 35060945 - 35060900
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| |||||||||| || |||||| |||||||||||||||||    
T  35060945 gctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaac 35060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 24454 - 24369
Alignment:
Q  20 aaataaaataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||| | ||||||||| ||| |||| ||||| || | |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  24454 aaataataaaagaattctgctcattactcaaacagtatcgctcattcccaaagtaaaagtttaaaatgcccctacgcatgttaact 24369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 33220865 - 33220792
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| |||| |||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  33220865 gaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaac 33220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 24899145 - 24899066
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    |||||||| |||||||| |||||  ||||| ||||||||| |||||| |  |||||||| ||||||||||||||||||||    
T  24899145 agaattctactctttacccaaacacttttgttcattcccagagtaaatgaccaaaatactcctacgcatgttaactcacg 24899066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 5967322 - 5967242
Alignment:
Q  24 aaaataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||| |||||||| ||| |||| |||| || || |||||||||||||||||| | || |||| |||||||||||||||||    
T  5967322 aaaattagaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaac 5967242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 1349299 - 1349220
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcac 108  Q
    ||||||||| |||||||| |||| | |||||||||||||| ||  ||| |  |||||||||| |||||||||||||||||    
T  1349299 aagaattctgctctttacccaaaagtttttgctcattcccgaatgaaatgaccaaaatacccttacgcatgttaactcac 1349220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 669 - 794
Target Start/End: Complemental strand, 4300053 - 4299922
Alignment:
Q  669 actcccttctgtcttgctcaaggtgcttttgcgtcagtttcttaatggcatgaataacctta----ggctccaatttcacttcagaaatatgag--tcaa 762  Q
    |||||||  ||||||||| ||||||||| ||  |||||||||||||||||  |||  |||||    |  |||||||| ||||||| ||||||||  ||||    
T  4300053 actccctcttgtcttgcttaaggtgcttctgtttcagtttcttaatggcagcaatgcccttaattagtttccaattttacttcagcaatatgagagtcaa 4299954  T
Q  763 cacatttacctaaataaccaaattatgaaaga 794  Q
    |||||||||||||| | ||||||||| |||||    
T  4299953 cacatttacctaaaaagccaaattataaaaga 4299922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 27235476 - 27235599
Alignment:
Q  184 ttaagtcacgcagcgtgacctaactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaac 283  Q
    |||| |||||| ||||||  ||||| |||||||||||| | |||||| |||||||||| |||||| | |||||| || || ||||| ||||| | ||||     
T  27235476 ttaactcacgctgcgtgatttaactcacgcaaatttaacattagcgtaagttaacatgtgtagggatattttagtcaatttctttgagaatgagcaaaaa 27235575  T
Q  284 cgtttggataaatagcaaaattca 307  Q
    | ||| |||||| |||| ||||||    
T  27235576 catttagataaagagcataattca 27235599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 43641051 - 43640977
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    ||||||| ||| |||| |||| ||||| ||||||| |||||||||| | ||||| | ||||||||||||||||||    
T  43641051 gaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaact 43640977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 24899056 - 24899113
Alignment:
Q  218 ttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatg 275  Q
    |||| ||||||||||||||||||||||||| || |||| | |||||||| ||||||||    
T  24899056 ttaaaactagcgtgagttaacatgcgtaggagtattttggtcatttactctgggaatg 24899113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 14087922 - 14087850
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaa 103  Q
    ||||||| |||||||| ||||||||||| ||||||| |||| |||| |||  |||| ||||||||||| ||||    
T  14087922 gaattctgctctttactcaaacggttttactcattctcaaaataaatgtttgaaatgcccctacgcatattaa 14087850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 23559062 - 23558982
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||||||| ||| |||  |||| ||||  ||||||| |||| |||||||| |||||| |||||||||||||||||| ||||    
T  23559062 agaattctgctcattatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccctacgcatgttaacttacgt 23558982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 26229116 - 26229068
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagt 79  Q
    ||||||| |||||||| ||||| |||||| |||||||||||||||||||    
T  26229116 gaattctgctctttacccaaactgttttgttcattcccaaagtaaaagt 26229068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 37686613 - 37686664
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagt 79  Q
    ||||||||||||||||||| ||||  |||| | |||||||||||||||||||    
T  37686613 taagaattctcctctttacccaaatcgtttcgttcattcccaaagtaaaagt 37686664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 1349196 - 1349297
Alignment:
Q  205 aactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaat 304  Q
    |||| |||||||||||| | ||| ||||||||||||||||| |||| |||| | |||||  || ||||||| | |||| | ||||| |||| |||| |||    
T  1349196 aactcacgcaaatttaacaatagtgtgagttaacatgcgtaagggtattttggtcatttcattcgggaatgagcaaaaacttttgggtaaagagcagaat 1349295  T
Q  305 tc 306  Q
    ||    
T  1349296 tc 1349297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 33220792 - 33220873
Alignment:
Q  233 gttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattcataaaata 314  Q
    |||||||||||||||||  ||||  || ||||||||||||||| || ||||| ||||| |||  |||| ||||||| |||||    
T  33220792 gttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaattcatgaaata 33220873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 35841396 - 35841469
Alignment:
Q  30 agaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaa 103  Q
    |||||||| ||||||||  |||| ||| ||||||||   |||||||| || ||||||| |||||||||||||||    
T  35841396 agaattctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaatatccctacgcatgttaa 35841469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 28360127 - 28360025
Alignment:
Q  204 taactaacgcaaatttaatactagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaa 303  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||| |||| | || || |||| |||||| ||||||  |||||| |||| |||| ||    
T  28360127 taactcacgcaaatttaacactagcgtgagttaacatgcgtagaggtattttggtcagtttcttt-ggaatgagtaaaaatgtttgggtaaagagcagaa 28360029  T
Q  304 ttca 307  Q
    ||||    
T  28360028 ttca 28360025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 37893074 - 37893007
Alignment:
Q  43 ttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||| |||||| ||||||||||| ||||    
T  37893074 ttacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaacttacgt 37893007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 2675142 - 2675233
Alignment:
Q  27 ataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgttaactttc 118  Q
    ||||||||||| |||||||  ||||  |||||| || ||| ||||||||| | |||||||| |||||| |||||||||||||| || |||||    
T  2675142 ataagaattctgctctttattcaaatagttttgttcgttctcaaagtaaatgatcaaaatagccctacccatgttaactcacgctagctttc 2675233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 11712980 - 11713031
Alignment:
Q  53 ggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||| ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  11712980 ggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaac 11713031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 12967267 - 12967344
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaa-gttcaaaatacccctacgcatgttaac 104  Q
    |||||||||| ||| ||||  ||| ||||  |||||||| |||||||||| || ||||||||||||||||||||||||    
T  12967267 taagaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaac 12967344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 12969306 - 12969269
Alignment:
Q  67 ccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    |||||||||||||||||||| |||||||||||||||||    
T  12969306 ccaaagtaaaagttcaaaatgcccctacgcatgttaac 12969269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 22788063 - 22787999
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacg 95  Q
    ||||||| |||||||| |||| || |||| |||||||||||||||| |  |||||||||||||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacg 22787999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 13329610 - 13329657
Alignment:
Q  261 tttactttgggaatgggtaaaaccgtttggataaatagcaaaattcat 308  Q
    ||||||||||||| ||| ||||||||||||||||| |||| |||||||    
T  13329610 tttactttgggaaagggcaaaaccgtttggataaagagcacaattcat 13329657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11573661 - 11573707
Alignment:
Q  59 gctcattcccaaagtaaaagttcaaaatacccctacgcatgttaact 105  Q
    |||||||||||||||||||||  ||||| |||||||| |||||||||    
T  11573661 gctcattcccaaagtaaaagtcaaaaatgcccctacgtatgttaact 11573707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 8273245 - 8273318
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| |||| || || |||||||||||||||||| |  | |||| |||||||||||||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 8273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 18387241 - 18387314
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaac 104  Q
    ||||||| ||| |||| |||| |||| |||||||||||||||||||  |  ||||| ||| |||||||||||||    
T  18387241 gaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaac 18387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 20685001 - 20685070
Alignment:
Q  26 aataagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacg 95  Q
    |||||||||||| ||| |||| |||| ||||  |||||||| ||||||||||||  ||||||||| ||||    
T  20685001 aataagaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaatacccttacg 20685070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 8384 - 8462
Alignment:
Q  31 gaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacg 109  Q
    ||||||| |||||||| |||||| || |||||||| | |||||||| ||  ||||||||| ||||||||||||||||||    
T  8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacgcatgttaactcacg 8462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 8467 - 8384
Alignment:
Q  223 actagcgtgagttaacatgcgtaggggtgttttagacatttactttgggaatgggtaaaaccgtttggataaatagcaaaattc 306  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| | | || ||||||| |||| |||| |||||    
T  8467 actagcgtgagttaacatgcgtaagggtattttacacatttactttagaaatgagcagaaacgtttgggtaaagagcagaattc 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 35773 - 35843
Alignment:
Q  28 taagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcat 98  Q
    |||||||||| |||||||  |||||  |||||||||||| ||||||||| || |||||| |||||||||||    
T  35773 taagaattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaatgcccctacgcat 35843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 444 - 363
Alignment:
Q  29 aagaattctcctctttacgcaaacggttttgctcattcccaaagtaaaagttcaaaatacccctacgcatgttaactcacgt 110  Q
    ||||||| | |||||||| |||| ||||| ||||||||||||||||||| | | |||| ||| || ||||||||||| ||||    
T  444 aagaattatgctctttacccaaatggtttcgctcattcccaaagtaaaaatcccaaatgcccttatgcatgttaacttacgt 363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University