View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_low_15 (Length: 239)
Name: NF12813_low_15
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 40393667 - 40393873
Alignment:
| Q |
11 |
ccacttattcattgtaagagatgaactagagtaactaagttacttgacaaaaaatacacacttgttaatttacaccttcagatttttaagtgagtgtaat |
110 |
Q |
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| T |
40393667 |
ccacttattcatcgtaagagatgaactatagtaactaagttacttgacaaaaaatacacacttgttaatttacaccttcagatttttaagtgactgta-- |
40393764 |
T |
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| Q |
111 |
tattaactcaaaccatgaatcatattaataaaggaaaatacaaatatttagattattagtgtattttcatcccatgatggaggaaaagaaaacataggaa |
210 |
Q |
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| T |
40393765 |
-attaactcaaaccatgaatcatattaataaagg-aaatacaaatacttagattattagtgtatttccatccaatgatggaggaaaagaaaac--aggaa |
40393860 |
T |
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| Q |
211 |
aaattgatagaag |
223 |
Q |
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| T |
40393861 |
aaattgatagaag |
40393873 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 40384981 - 40385077
Alignment:
| Q |
117 |
ctcaaaccatgaatcatattaataaaggaaaatacaaatatttagattattagtgtattttcatcccatgatggaggaaaagaaaacataggaaaaa |
213 |
Q |
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| T |
40384981 |
ctcaaaccatgaatcaaattaataaaggaaaatacaaatatttagattactagtgtatttccatcccatcatggaggaaaagaaaacataggaaaaa |
40385077 |
T |
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