View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_low_17 (Length: 236)
Name: NF12813_low_17
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46146191 - 46145970
Alignment:
| Q |
1 |
ttttttcttattaaggtacttgcaccatgaggcaaatcctcacataattcatagagacataaaggcaagcaatgttctattagacacagaatttcaagcc |
100 |
Q |
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| T |
46146191 |
ttttttcttattaaggtacttgcaccatgaggcaaatcctcacataattcatagagacataaaggcaagcaatgttctattagacacagaatttcaagcc |
46146092 |
T |
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| Q |
101 |
aaggtagctgattttggttttgcaaagctaataccagcaggtgtaagccatcttacaacaagggttaaaggcacacttggttatttggcaccagaatatg |
200 |
Q |
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| T |
46146091 |
aaggtagctgattttggttttgcaaagctaataccagcaggtgtaagccatcttacaacaagggttaaaggcacacttggttatttggcaccagaatatg |
46145992 |
T |
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| Q |
201 |
ctatgtggggtaaggtttctga |
222 |
Q |
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| T |
46145991 |
ctatgtggggtaaggtttctga |
46145970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 53682330 - 53682215
Alignment:
| Q |
107 |
gctgattttggttttgcaaagctaataccagcaggtgtaagccatcttacaacaagggttaaaggcacacttggttatttggcaccagaatatgctatgt |
206 |
Q |
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| T |
53682330 |
gctgattttggttttgcaaagctaataccagaaggagttagtcacatgacaaccagggttaagggtaccttaggatacttagcacctgagtatgctatgt |
53682231 |
T |
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| Q |
207 |
ggggtaaggtttctga |
222 |
Q |
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| T |
53682230 |
ggggaaaagtttctga |
53682215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 53682423 - 53682361
Alignment:
| Q |
14 |
aggtacttgcaccatgaggcaaatcctcacataattcatagagacataaaggcaagcaatgtt |
76 |
Q |
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| T |
53682423 |
aggtacttgcaccatgaggtcacaccccacatcattcatagagacatcaaggcaagtaatgtt |
53682361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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