View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_low_18 (Length: 230)
Name: NF12813_low_18
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 40897855 - 40898010
Alignment:
| Q |
14 |
cacagatgcatttctctccttatggctctaccatctataaatagaaaacctaagacagcaacaagtatcaccaccaacattacactcaatagagccaatc |
113 |
Q |
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| T |
40897855 |
cacaaatgcatttctctccttatggctctaccatctataaatagaaaacctaagacagcaacaagtatcattactaacattacattcaatagagccaatc |
40897954 |
T |
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| Q |
114 |
tcattttcttataactcgcatcaaatccattgcttcgtacagccaaaacatacacc |
169 |
Q |
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| T |
40897955 |
ccattttcttgtaactcacatcaaatccatttcttggtacagccaaaacattcacc |
40898010 |
T |
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