View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12813_low_19 (Length: 223)

Name: NF12813_low_19
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12813_low_19
NF12813_low_19
[»] chr4 (3 HSPs)
chr4 (21-209)||(48912127-48912315)
chr4 (64-188)||(48958374-48958498)
chr4 (19-178)||(48965566-48965725)
[»] scaffold0536 (2 HSPs)
scaffold0536 (21-188)||(6293-6460)
scaffold0536 (21-188)||(10277-10442)
[»] chr6 (2 HSPs)
chr6 (27-178)||(12589957-12590108)
chr6 (21-181)||(12483246-12483406)
[»] chr2 (2 HSPs)
chr2 (65-188)||(13440427-13440550)
chr2 (103-188)||(13448590-13448675)
[»] chr7 (1 HSPs)
chr7 (43-188)||(3417334-3417479)
[»] chr5 (1 HSPs)
chr5 (65-188)||(28385561-28385684)
[»] chr8 (1 HSPs)
chr8 (111-188)||(12641353-12641430)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 48912127 - 48912315
Alignment:
Q  21 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48912127 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaac 48912226  T
Q  121 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacagtgaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  48912227 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaa 48912315  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 48958498 - 48958374
Alignment:
Q  64 ataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt 163  Q
    ||||||| ||| ||||||||||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  48958498 ataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatt 48958399  T
Q  164 catatgggttgttcctgaaaagaaa 188  Q
      |||||||||||||||| ||||||    
T  48958398 tgtatgggttgttcctgagaagaaa 48958374  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 48965725 - 48965566
Alignment:
Q  19 cagtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaaca 118  Q
    ||||||| ||||| ||||||||||||||||| || || || | | ||||||| ||| |||||||| ||||||||||||  |||| || |  |||||||||    
T  48965725 cagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaaca 48965626  T
Q  119 actttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 178  Q
     ||||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||    
T  48965625 gctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc 48965566  T

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Target: scaffold0536 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 6293 - 6460
Alignment:
Q  21 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 120  Q
    ||||||||||| |||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||||||||    
T  6293 gtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaac 6392  T
Q  121 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaa 188  Q
    |||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||| ||||||    
T  6393 tttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctgagaagaaa 6460  T

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Target: scaffold0536; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 10277 - 10442
Alignment:
Q  21 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 120  Q
    ||||||||||| |||||| ||||||||||||||| ||| | |||||  || ||| ||||||| ||||||||||||| |||| ||||||| ||||||||||    
T  10277 gtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaac 10374  T
Q  121 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaa 188  Q
    ||||||||||||||||| || | ||||||||| || |||||||  |||| ||||||||||| ||||||    
T  10375 tttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctgagaagaaa 10442  T

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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 12589957 - 12590108
Alignment:
Q  27 gtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatg 126  Q
    ||||| |||||| |||||||||| |||||||| | ||||||||| ||| |||||||||||||||| |||  |||  |||| || ||||||||||||||||    
T  12589957 gtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatg 12590056  T
Q  127 agattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 178  Q
    ||||| |||| || || ||||||||  | ||||||||| |||||||| ||||    
T  12590057 agatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 12483246 - 12483406
Alignment:
Q  21 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 120  Q
    ||||| ||||| ||||||   |||||||| ||||| || ||||| || || ||| |||||||||||||||| |||| |||  |||| || |||||||| |    
T  12483246 gtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagc 12483345  T
Q  121 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctga 181  Q
    |||| || ||| | ||||| || ||||||||| || |  ||||||||||||||||||||||    
T  12483346 tttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctga 12483406  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 13440550 - 13440427
Alignment:
Q  65 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 164  Q
    |||||||||| |||||||||| |||||||||       |||| || ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||    
T  13440550 taactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattc 13440451  T
Q  165 atatgggttgttcctgaaaagaaa 188  Q
    ||||||||||||||||| ||||||    
T  13440450 atatgggttgttcctgagaagaaa 13440427  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 13448675 - 13448590
Alignment:
Q  103 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaa 188  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| ||||||    
T  13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaa 13448590  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 3417334 - 3417479
Alignment:
Q  43 gttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggat 142  Q
    ||||||| |||||  |||||| |||||| ||| |||||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  ||    
T  3417334 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaat 3417433  T
Q  143 tgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaa 188  Q
     ||||||||| |||||  ||||||||||||||||| ||| ||||||    
T  3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaa 3417479  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 28385684 - 28385561
Alignment:
Q  65 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 164  Q
    |||||| || ||||||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  165 atatgggttgttcctgaaaagaaa 188  Q
    ||||||||||||||||| ||||||    
T  28385584 atatgggttgttcctgagaagaaa 28385561  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 12641353 - 12641430
Alignment:
Q  111 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaa 188  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| ||||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaa 12641430  T

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