View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_low_2 (Length: 736)
Name: NF12813_low_2
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 189 - 721
Target Start/End: Original strand, 31883376 - 31883925
Alignment:
| Q |
189 |
ttattgtaaagtgaagttaaggtcactaagatcttttattgtaagaggag------------------tgttgtggtaattgtcttatttactggagtaa |
270 |
Q |
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| T |
31883376 |
ttattgtaaagtgaagttaaggtcactaaaatcttttattgtaagaggagtgttacactccctgggagtgttgtggtaattgtcttatttactggagtaa |
31883475 |
T |
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| Q |
271 |
gaaaggtctagttcgaggaaaactttttatttttgggtaaaacaatttcaaaggtatatgtgccgaggatgtgtatcatgtcaatgaattttcctgtttt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
31883476 |
gaaaggtctagttcgaggaaaactttttatttttgggtaaaacaatttcaaaggtatatgtgccgaggatgtgtatcatgtcaatgaatttccttgtttt |
31883575 |
T |
|
| Q |
371 |
tatgttctttgcaagaaatattttgctagtgcaatgtttcgctcgcaaggtgttgaagtgtgaactgtgtaagatgagactatgattatttgtcacatcc |
470 |
Q |
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| T |
31883576 |
tatgttctttgcaagaaatattttgctagtgcaatgtttcgctcgcaaggtgttgaagtgtgagctgtgtaagatgagactatgattatttgtcacatcc |
31883675 |
T |
|
| Q |
471 |
ctcatttaagatgtatttgatccttattacgaggaagagattgagtgaacatgacctttgatccccttccaccacgtgttagggctacttctttgcactt |
570 |
Q |
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| T |
31883676 |
ctcatttaagatgtatttgatccttactacgaggaagagattgagtgaacatgacctttgatccccttccaccacgtgttagggctacttctttgcactt |
31883775 |
T |
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| Q |
571 |
gatggcctagacttttcgagtgctttcctgtgttagtactgaggaagattcgtcgcaattggattgatcatgatgcttggggttttgttggatctcttga |
670 |
Q |
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| T |
31883776 |
gatggcctagac-tttctagtgctttcttgtgttggtactgaggaagattcgtcgcaattggattgatcatgatgcttggggttttgttagatctcttga |
31883874 |
T |
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| Q |
671 |
agaaccgttggattgaacgagtctttttcaacttgatcgtttgattgttat |
721 |
Q |
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| T |
31883875 |
agaaccgttggattgaacgagtctttttcaacttgatcgtttgattgttat |
31883925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 31882988 - 31883190
Alignment:
| Q |
7 |
cgtttgtatcttctcggagtgaagggtgatgactttgagaagctttatgtttgtgaaggatgaaagtttcatagttatgagataatttccttagggggga |
106 |
Q |
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| T |
31882988 |
cgtttgtatcttctcggagtgaagggtgatgactttgagaagctttatgtttgtgaaggatgaaagtttcatagttatgggataatttccttagggggga |
31883087 |
T |
|
| Q |
107 |
aatttgaactcgttgga------------gaagaatatataagctcatagagagcttttattgtagaggaatacttaaaacttgaggagagtatttattg |
194 |
Q |
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| T |
31883088 |
aatttgaactcgttggagaatttattgtcgaagaatatataagctcatagagagcttttattgtagaggaatacttaaaacttgcggagagtatttattg |
31883187 |
T |
|
| Q |
195 |
taa |
197 |
Q |
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||| |
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| T |
31883188 |
taa |
31883190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 583
Target Start/End: Original strand, 23972109 - 23972143
Alignment:
| Q |
549 |
ttagggctacttctttgcacttgatggcctagact |
583 |
Q |
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| T |
23972109 |
ttagggctacttcattgcacttgatggcctagact |
23972143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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