View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_low_5 (Length: 484)
Name: NF12813_low_5
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 467
Target Start/End: Complemental strand, 32215337 - 32214873
Alignment:
| Q |
4 |
tgaacttttgctaaaaagattttgactcgattaatatcaaagtatgatggttgctccatggacttcaagattactcaattgacttaaaaa-tcaatctgg |
102 |
Q |
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| T |
32215337 |
tgaacttttgctaaaaagattttgactcgattaatatcaaaatatgatggttgctccatggacttcaagatcactcaattgactaaaaaaatcaatttgg |
32215238 |
T |
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| Q |
103 |
acctaggactcgattgaaagtaaaattgagatatctgttgaacaaatttctcaaagttttagatgattttctaatatagatccatcatagaccaaatgag |
202 |
Q |
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| T |
32215237 |
acctacgactcgattgaaagcgaaattgagatatttgctgaacaaatttctcaaagttttagatgattttctaatatagatccatcatagaccaaatgag |
32215138 |
T |
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| Q |
203 |
acaaaacccaaataattggcccatctaaacatctatctagaagtgctgctatgcatactcctcttcttgtttggtgtgtgatctggaggtcatgctataa |
302 |
Q |
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| T |
32215137 |
acaaaacccaaataattggcccatctaaacatctatctagaagtgctgctatgcatactcctcttcttgtttggtgtgtgatctggaggtcatgctataa |
32215038 |
T |
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| Q |
303 |
ttaagcacataatgaactcatttcctatactactataatttatttatcaaattagaagcaaagctcatgtgagtaagtgactgacatgcaacctgacatg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32215037 |
ttaagcacataatgaactcatttcctatactactataatttatttatcaaattagaagcaaagctcatgtgagtaagtgactgacatgcaacctgacatg |
32214938 |
T |
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| Q |
403 |
acttagcccttagcatttgtttttcaaaattcttattctactaccattgaaagggtgtcacaact |
467 |
Q |
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| T |
32214937 |
acttagcccttagcatttgtttttcaaaattcttattctactaccattgaaaggttgtcacaact |
32214873 |
T |
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