View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12813_low_6 (Length: 399)
Name: NF12813_low_6
Description: NF12813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12813_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 2625490 - 2625848
Alignment:
| Q |
16 |
aattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaaga |
115 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2625490 |
aattttcattgtgtgatatagatttaaatgttgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctcatgaagaggctgaaga |
2625589 |
T |
|
| Q |
116 |
gttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaattgttgttttcttattcttctgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2625590 |
gttcaacaatgataatattggtattgtagttgttcatttatgtgcagttagctttgtcacctttgtaacactactaattgttgttttcttattcttctag |
2625689 |
T |
|
| Q |
216 |
tattgtttttttcatattgnnnnnnnnnnccaacaattaaattgtggctgaagagttccaccacgtgctttgtcttgtactccaacacatgagctaaatg |
315 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
2625690 |
tattgttttttt----------------tccaacaattaaattgtggctgaagagttccaccatgtgctttgtcttgtactccatcacatgagctaaatg |
2625773 |
T |
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| Q |
316 |
tcttccactatttattctccatacatatgtcattacgtgaaacaattgcatatgaatgaggatatgccttcatct |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2625774 |
tcttccactatttattctccatacatatgtcattacgtgaaacaattgcgtatgaatgaggatatgccttcatct |
2625848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 28840820 - 28841117
Alignment:
| Q |
16 |
aattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaaga |
115 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
28840820 |
aattttcattgtgtgatatagatttaaatgttgaatttacacctttgccagatcttaatattgatacagaagaaatattttctcatgaagaggttgaaga |
28840919 |
T |
|
| Q |
116 |
gttcaacaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaattgttgttttcttattcttctgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28840920 |
gttcaacaatgataatattggtattgtagttgttcatttatgtgtatttagttttgtcacctttgtaacactactaattgttgttttcttattcttctgg |
28841019 |
T |
|
| Q |
216 |
tattgtttttttcatattg-nnnnnnnnnnccaacaattaaattgtggctgaagagttccaccacgtgctttgtcttgtactccaacacatgagctaa |
312 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28841020 |
tattgtttttttcatattgttttttttcttccaacaattaaattgtggctgaggagttccaccacgtgctttgtcttgtactccaacacatgagctaa |
28841117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 28537279 - 28537447
Alignment:
| Q |
21 |
tcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaagagttca |
120 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||| |
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| T |
28537279 |
tcattatgtgatatagatttaaatgttgaatttacacctttgttagatcttaattttgatgcagaagtaatcttttctcatgaagaggctgaagagttca |
28537378 |
T |
|
| Q |
121 |
acaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa |
192 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28537379 |
gcaatg---atattggtattgtatttgttcatttatgtgcatttagctttgtcacctttgttacactactaa |
28537447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 33686121 - 33685959
Alignment:
| Q |
27 |
tgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaagagttcaacaatg |
126 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
33686121 |
tgtgatatagatttaaatgttgaatttacacctttgccagatcttaattttgatgcagaagaaatcttttctcatgaagaggctgaagagttcaacaatg |
33686022 |
T |
|
| Q |
127 |
ataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||| |
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| T |
33686021 |
---atattggtattgtatttgttcatttatgtgcatttagctttgtcccctttcttacactactaa |
33685959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 13249541 - 13249709
Alignment:
| Q |
21 |
tcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaagagttca |
120 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||| |
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| T |
13249541 |
tcattatgtgatatagatttaattgttgaatttacacctttgccagatcttaattttgatgcagaagaaatcttttctcatgtagaggctgaagagttca |
13249640 |
T |
|
| Q |
121 |
acaatgataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa |
192 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13249641 |
acaatg---atattagtattgtatttgttcatttatgtgcatttagctttgtcacctttgttacactactaa |
13249709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 17352232 - 17352394
Alignment:
| Q |
27 |
tgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaagagttcaacaatg |
126 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
17352232 |
tgtgatatagatttaaatgttgaatttacacctttgctagatcttaattttgatgtagaagaaatcttttctcatgaagaggccgaagagttcaacaatg |
17352331 |
T |
|
| Q |
127 |
ataatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
17352332 |
---atattggtattgtatttgttcatttatgtgcatttagctttgtcacctttgttacactactaa |
17352394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 24011880 - 24011744
Alignment:
| Q |
16 |
aattatcattgtgtgatatagatttaaatattgaatttacacctttgccagatcttaatattgatgcagaagaaatattttctaatgaagaggctgaaga |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
24011880 |
aattttcattgtgtgatatagatttaattgttgaatttacacctttgctagatcttaatattgatacagaagaaatattttctcatgaagaggctgaaga |
24011781 |
T |
|
| Q |
116 |
gttcaacaatgataatattggtattgtagttgttcat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
24011780 |
gttcaacaatgataatattggtattgtagttgttcat |
24011744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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