View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12814_high_3 (Length: 219)
Name: NF12814_high_3
Description: NF12814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12814_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 43535718 - 43535912
Alignment:
| Q |
1 |
aagcacgatacagacatggacactttta--aaactcaatgataatttgaaaaaattcacataattcaatgtcaatacatttgtgggtgtcgtgggcacgg |
98 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
43535718 |
aagcacgatacagacatggacacttttttgaaactcaatgataatttgaaaaaattcacacaattcaatgtcaatacatgcg------------gcacgg |
43535805 |
T |
|
| Q |
99 |
ctttgataagaagtgtcggtgttttagaggttttaattaatgcctgcttgttcgttgtttgaagtagtttggattggattaatggcaagtgaaatttgtg |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43535806 |
ctttgataagaagtgtcggtattttagaggttttaattaatgcctgcttgttcgttggttgaagtagtttggattggattaatggcaagtgaaatttgtg |
43535905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 8713989 - 8714041
Alignment:
| Q |
39 |
ataatttgaaaaaattcacataattcaatgtcaatacatttgtgggtgtcgtg |
91 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| | |||| ||||||||||||| |
|
|
| T |
8713989 |
ataatttgaaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtg |
8714041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University