View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12814_low_3 (Length: 279)
Name: NF12814_low_3
Description: NF12814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12814_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 95 - 266
Target Start/End: Original strand, 2592554 - 2592726
Alignment:
| Q |
95 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtggtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2592554 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtgctg |
2592653 |
T |
|
| Q |
195 |
gttttttcttgaatgat-aataatgggtttaccttttcaacatttgtgtctcttttatacaagaaccacaggt |
266 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2592654 |
gttttttcttgaatgataaataatgggtttgccttttcaacatttgtgtctcttttatacaacaaccacaggt |
2592726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 2592477 - 2592527
Alignment:
| Q |
18 |
atgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592477 |
atgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
2592527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University