View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12815_high_1 (Length: 557)
Name: NF12815_high_1
Description: NF12815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12815_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 40125789 - 40125244
Alignment:
| Q |
1 |
acatgaaatatgaagagaggttgttaagtaaaaacctgcatttcnnnnnnnnnnnnnnnnnncctgcatttctacaatgtgtggccatatagccaattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40125789 |
acatgaaatatgaagagaggttgttaagtaaaaacctgcatttcaaaaagaaaattaaaaaacctgcatttctacaatgtgtggccatatagccaattta |
40125690 |
T |
|
| Q |
101 |
ggatcacaaaaatcatttacctatgatttgctggtatattaaattcataaactatgtatgtattcgtcatagacctcacatccacaacttaaacatctac |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125689 |
ggatcacaaaaatcatttacctatgattttctggtatattaaattcataaactatgtatgtattcgtcatagacctcacatccacaacttaaacatctac |
40125590 |
T |
|
| Q |
201 |
tttttcttaaccaaaaataagataaaaatacaactactttattttagccaaagagcagcttcaaattaaaacaaatcaaactcttggggtgatgacggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |
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| T |
40125589 |
tttttcttaaccaaaaataagataaaaatacaactactttattttagccaaagagcagcttccaa-----acaaatcaaactcttggggtgatgatggga |
40125495 |
T |
|
| Q |
301 |
ggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaaccaggtgtgattaccttttcatcct---cattattctttccaa |
397 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| || ||||||| || |||| ||||||||||||||| |
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| T |
40125494 |
ggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggttattacctcctcttcctgatcattattctttccaa |
40125395 |
T |
|
| Q |
398 |
aatattcagcttgaaagtactgataccagctattagtagtactcactggcactaatggaggagacacttcaacagtgtctttgtttgtgaagtttttcat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40125394 |
aatattcagcttgaaagtactgataccagctattagtagtactcactggctctaatggaggggacacttcaacagtgtctttgtttgtgaagtttttcat |
40125295 |
T |
|
| Q |
498 |
tggaagggaaggtggaacactgtcattggcaatggtatggtctgtgctgct |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
40125294 |
tggaagggaaggtggaacactgtcattggcaatggtatggtttgtggtgct |
40125244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 269 - 548
Target Start/End: Complemental strand, 40093054 - 40092772
Alignment:
| Q |
269 |
aaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaaccaggtgtgat |
368 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| || || |
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| T |
40093054 |
aaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaactaggggttat |
40092955 |
T |
|
| Q |
369 |
taccttttcatcct---cattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggcactaatggaggagacact |
465 |
Q |
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| T |
40092954 |
tacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagctattagtagtactcactggctctaatggaggggacact |
40092855 |
T |
|
| Q |
466 |
tcaacagtgtctttgtttgtgaagtttttcattggaagggaaggtggaacactgtcattggcaatggtatggtctgtgctgct |
548 |
Q |
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| T |
40092854 |
tcaacactgtctttgtttgtgaagtttttcattggaagggaaggtggaacactgtcattggcaatggtatggtttgtggtgct |
40092772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 269 - 509
Target Start/End: Complemental strand, 40121874 - 40121631
Alignment:
| Q |
269 |
aaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaaccaggtgtgat |
368 |
Q |
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||||| |||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
40121874 |
aaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgttat |
40121775 |
T |
|
| Q |
369 |
taccttttcatcctcattattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggcactaatggaggagacact |
465 |
Q |
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| T |
40121774 |
tacctccttttcctcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggacact |
40121675 |
T |
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| Q |
466 |
tcaacagtgtctttgtttgtgaagtttttcattggaagggaagg |
509 |
Q |
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|||||| ||||| || ||| | |||||||||||||| ||||| |
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| T |
40121674 |
tcaacattgtctctgcttgatagatttttcattggaagagaagg |
40121631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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