View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12815_high_2 (Length: 443)
Name: NF12815_high_2
Description: NF12815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12815_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 52000047 - 52000462
Alignment:
| Q |
18 |
gtttctgcagcagttgaccaacaaaagagagcatgaattgatgcttctgttccaactttttcaaacaatcctttcggcaatgtgattgcttctcattcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52000047 |
gtttctgcagcagttgaccaacaaaagagagcatgaattgatgcttctgttccaactttttcaaacaatcctttcggcaatgtgattgcttctcattcat |
52000146 |
T |
|
| Q |
118 |
tttccactcctgaccttgtctctgaaattccaaaagtaattgttatttctcatgtctaagttattctatcttagctatgaaattccttcattctgattct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52000147 |
tttccactcctgaccttgtctctgaaattccaaaggtaattgttatttctcatgtctaaatttttctatcttagctatgaaattccttcattctgattct |
52000246 |
T |
|
| Q |
218 |
gttagtgaagcagcagcaatagcatcttggacatgaactctgtgtcaggggtagtcattgttcctgatcctgttgcaactaagccagtgctagttgttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52000247 |
gttagtgaagcagcagcaatagcatcttggacatgaactctgtgtcaggggtagtcattgttcctgatcctgttgcaactaagccagtgctagttgttgt |
52000346 |
T |
|
| Q |
318 |
tcctaatcaggttgcaactgagccactggtagtggttgctcctaatcctatttcaactgagccaaaaatagttgttgttcctgatcttgttgcaatcgag |
417 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52000347 |
tcctaatcatgttgcaactgagccactagtagtggttgctcctaatcctatttcaactgagccaaaaatagttgttgttcctgatcttgttgcaatcgag |
52000446 |
T |
|
| Q |
418 |
ctagctgtagcctttg |
433 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
52000447 |
ctagttgtagcctttg |
52000462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 377
Target Start/End: Complemental strand, 51999396 - 51999203
Alignment:
| Q |
184 |
tatcttagctatgaaattccttcattctgattctgttagtgaagcagcagcaatagcatcttggacatgaactctgtgtcaggggtagtcattgttcctg |
283 |
Q |
| |
|
||||||| || ||||||||| || ||| ||||||||||||| || |||| | || | ||||||||||||| |||| || ||||||| ||||||| | |
|
|
| T |
51999396 |
tatcttatctttgaaattccatcgttccgattctgttagtgtagtcgcagtagcagtctgttggacatgaactttgtgcaagtggtagtcgttgttccag |
51999297 |
T |
|
| Q |
284 |
atcctgttgcaactaagccagtgctagttgttgttcctaatcaggttgcaactgagccactggtagtggttgctcctaatcctatttcaactga |
377 |
Q |
| |
|
||| ||||||| | |||||||| |||||||||||| | || |||||||||||| | ||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
51999296 |
atctagttgcaagtgagccagtggtagttgttgttcttgttcctgttgcaactgagtgagtggtagtcgttgttcctaatcctattgcaactga |
51999203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 51999524 - 51999413
Alignment:
| Q |
18 |
gtttctgcagcagttgaccaacaaaagagagcatgaattgatgcttctgttccaactttttcaaacaatcctttcggcaatgtgattgcttctcattcat |
117 |
Q |
| |
|
|||||| ||||| |||||||||| |||| | ||| |||| ||||| ||||||| | ||| ||||| |||||| |||||| | ||| |||||||||| |
|
|
| T |
51999524 |
gtttcttcagcacttgaccaacagaagaaaacatacattgctgcttttgttccatcatttccaaacgatccttcaagcaatgaaactgcatctcattcat |
51999425 |
T |
|
| Q |
118 |
tttccactcctg |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51999424 |
tttccactcctg |
51999413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 5300811 - 5300746
Alignment:
| Q |
275 |
ttgttcctgatcctgttgcaactaagccagtgctagttgttgttcctaatcaggttgcaactgagc |
340 |
Q |
| |
|
||||||||||||| ||||||||| || ||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
5300811 |
ttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagc |
5300746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University