View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12815_low_1 (Length: 658)
Name: NF12815_low_1
Description: NF12815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12815_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 40074393 - 40073722
Alignment:
| Q |
1 |
acataaacaaaccaatgcgttcttctgtggctgaggccattgctttgctgatatcggaaggtatgaactatgaacagtatcagtatgaacgacttggata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074393 |
acataaacaaaccaatgcgttcttctgtggctgaggccattgctttgctgatatcggaaggtatgaactatgaacagtatcagtatgaacgacttggata |
40074294 |
T |
|
| Q |
101 |
aggtttaagtacgtggaacatttaaatgtttctcaacctttagttttggctgggtgaataaaacccgttacttcccatcaagtcaaggatagctatttat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40074293 |
aggtttaagtgcgtggaacatttaaatgtttctcaacctttagttttggctgggtgaataaaacccgttacttgccatcaagtcaaggatagctatttat |
40074194 |
T |
|
| Q |
201 |
tggcagcttc----------------------gtagttcaactaataaaaacttgataatgaaaaagtgtttgacttggagtaatattcagattgatttg |
278 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074193 |
tggcagcttcttacaaacaacctgtatcttcagtagttcaactaataaaaacttgataatgaaaaagtgtttgacttggagtaatattcagattgatttg |
40074094 |
T |
|
| Q |
279 |
gaatagtatttgaataagtgatttttt-agggagtttttcagaaagtgaggacaaagtgaataatctctagagtgatattattcactttacattctaaaa |
377 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074093 |
gaatagtatttgaataagtgatttttttagggagtttttcagaaagtgaggacaaagtgaataatctctagagtgatattattcactttacattctaaaa |
40073994 |
T |
|
| Q |
378 |
tgaattgttcattttattacaaacctgatcttgtctttgtataaacttatatttattgaactcttaactcgtcaagttaagtcaaacctaaaaacaggtt |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40073993 |
tgaattgttcattttattacaaacctgatcttgtctttgtataaacttatatttattgaactcttaactcgtcaagttaagtcaaacctaaaaacaggtt |
40073894 |
T |
|
| Q |
478 |
ggtctaatgaaaataatcgcatgcacaatccatcctctgcacaccactaaattttggttaatcaaccattaagtcgctgtgttattataatcttacaaaa |
577 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
40073893 |
ggtgtaatgaaaataatcgcatgcacaatccatcctccgcacaccactaaattttggttaatcaaccattaagttgctgtgttat--taatcttacaaaa |
40073796 |
T |
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| Q |
578 |
aataataagataaatattattataaaataacacaccaaatccttatcaaaccgtagatttggacagtgaacgag |
651 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |
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| T |
40073795 |
aataataagataaatattattataaaataacacatcaaatccgtatcaaaccgtagatttgaacagtgaacgag |
40073722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 40086469 - 40086430
Alignment:
| Q |
5 |
aaacaaaccaatgcgttcttctgtggctgaggccattgct |
44 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||| |
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| T |
40086469 |
aaacaaacaaatgcgttcttctgtggcagaggccattgct |
40086430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 28198754 - 28198712
Alignment:
| Q |
351 |
tgatattattcactttacattctaaaatgaattgttcatttta |
393 |
Q |
| |
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| T |
28198754 |
tgatattattcacgttacattctaaaatgagttgttcacttta |
28198712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47392963 - 47393016
Alignment:
| Q |
1 |
acataaacaaaccaatgcgttcttctgtggctgaggccattgctttgctgatat |
54 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47392963 |
acataaacaaaccaatgcgttcttctgtggctgaggccattgctttgctgatat |
47393016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 19286242 - 19286200
Alignment:
| Q |
351 |
tgatattattcactttacattctaaaatgaattgttcatttta |
393 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
19286242 |
tgatattattcactttacattttaaaatgaattgttcacttta |
19286200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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