View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12816_high_11 (Length: 374)
Name: NF12816_high_11
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_high_11 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0175 (1 HSPs) |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 1221289 - 1221667
Alignment:
| Q |
1 |
acacacttctgcaccagacattttggctagagccatcattaatattgagacttgtcaagactgtcaaagtatggatgatcaagtgctgctttggcagata |
100 |
Q |
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| T |
1221289 |
acacacttctgcaccagacattttggctagagccatcattaatattgagacttgtcaagactgtcaaagtatggatgatcaagtgctgctttggcagata |
1221388 |
T |
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| Q |
101 |
ttctctcagcaggattgtacttgagcattttctgcaggtacataaaatgtatacaattacaatcacagttcggtggaaacaaaaag--gagacacacatt |
198 |
Q |
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| T |
1221389 |
ttctctcagcaggattgtacttgagcattttctgcaggtacataaaatgtatacaattacaatcacagttcggtggaaacaaaaagaagagacacacatt |
1221488 |
T |
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| Q |
199 |
attgaacatggtgaatgtggcatgtcgtgaatttatttaaagtattctggtatatac---acaatctaatcataatttcctatcattacatgaaagtaac |
295 |
Q |
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| T |
1221489 |
attgaacatggtgaaggtggcatgtcgtgaatttatttaaagtattctggtatatacacaacaatctaatcataatttcctatcattacatgaaagtaac |
1221588 |
T |
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| Q |
296 |
ctcagttcacttaactactgagactaagatgtactataatgtatcaatgagtgataatgatcttgtgaactgacactga |
374 |
Q |
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| T |
1221589 |
ctcagttcacttaactactgagactaagatgtactacaatgtatcaatgagtgataatgatcttgtgaactgacactga |
1221667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 55858730 - 55858821
Alignment:
| Q |
209 |
gtgaatgtggcatgtcgtgaatttatttaaagtattctggtatatacacaatctaatcataatttcctatcattacatgaaagtaacctcag |
300 |
Q |
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| T |
55858730 |
gtgaaggtggcatgttgtgaatttatttgaagtattgtggtatatacacaatccggtcataatttcctatcactacatgaaagtaacctcag |
55858821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 29760 - 29974
Alignment:
| Q |
3 |
acacttctgcaccagacattttggctagagccatcattaatattgagacttgtcaa--------gactgtcaaagtatggatgatcaagtgctgctttgg |
94 |
Q |
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| T |
29760 |
acacttttgcaccaaacattttggctaaagccatcattaatattgagacttgtcaatgactcaagactgtcaaagtatggatgatcaagtgctgttttgg |
29859 |
T |
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| Q |
95 |
cagatattctctcagcaggattgtacttgagcattttctgcaggtacataaaatgtatacaattacaatcacagttcggtggaaacaaaa-aggagacac |
193 |
Q |
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|| |||||||||||||| |||||| |||||||||||||||||||| || || |||||||| ||| |||||||||| |||| |||| | ||||||| |
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| T |
29860 |
catatattctctcagcatgattgtgcttgagcattttctgcaggt-----aagtgcatacaatttcaaccacagttcggcagaaagaaaataagagacac |
29954 |
T |
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| Q |
194 |
acattattgaacatggtgaa |
213 |
Q |
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| T |
29955 |
acatcactgaacatggtgaa |
29974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 10497 - 10657
Alignment:
| Q |
209 |
gtgaatgtggcatgtcgtgaatttatttaaagtattctggtatatacacaatctaatcataatttcctatcattacatgaaagtaacctcagttcactta |
308 |
Q |
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||||| ||||||||| || ||||||||| | ||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| || |
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| T |
10497 |
gtgaaggtggcatgttgtaaatttatttgaggtattttggtatatacacaatccaatcataattttctatcactacatgaaagtaacctcagttcagata |
10596 |
T |
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| Q |
309 |
actactgagactaagatgtactataatgtatcaatgagtgataatgatcttgtgaactgaca |
370 |
Q |
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| T |
10597 |
accaccgagactaaaatatactacaatgtaccaat-agtgattatcatcttgagaactgaca |
10657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 29275868 - 29275777
Alignment:
| Q |
209 |
gtgaatgtggcatgtcgtgaatttatttaaagtattctggtatatacacaatctaatcataatttcctatcattacatgaaagtaacctcag |
300 |
Q |
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||||| ||||||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
29275868 |
gtgaaggtggcatgttgtgaatttatttgaagtattgtggtatatacacaatccggtcataatttcctatcactacatgaaagtaacctcag |
29275777 |
T |
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