View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12816_high_12 (Length: 333)
Name: NF12816_high_12
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 28276922 - 28276650
Alignment:
| Q |
10 |
actttcaccttattgcttttgtttagaaagataattgggtaaataatttaactaaccactttttcattaagtgttcattacataagaattatatataaaa |
109 |
Q |
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| T |
28276922 |
acttttaccttattgcttttgtttagaaagataattgggtaaataatttaactaac-actttttcattaagtgttcattacataagaattatatataaaa |
28276824 |
T |
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| Q |
110 |
-gtacatttatatctataataaggaggcataaaaaacttatacataatatttggaaccctagactttttgcatctttgaaattcacatgacaatcaaaca |
208 |
Q |
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| T |
28276823 |
agtacatttatatctataata-ggaggcataaaaaacttatacataatatttggaaccccagactttttgtatctttgaaattcacatgacaatcaaaca |
28276725 |
T |
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| Q |
209 |
attttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttctttgaaatgctatata |
283 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28276724 |
tttttctaatgagcttgttcgtgacttcgaaatgctataaatgaatcggagagctcttctttgaaatgctatata |
28276650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 28296365 - 28296549
Alignment:
| Q |
10 |
actttcaccttattgcttttgtttagaaagata--attgggtaaataatttaactaaccactttttcattaagtgttcattacataagaattatatataa |
107 |
Q |
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| T |
28296365 |
actttcaccttattgcttttgtttagaaagatataattggataaataatttaactaaccactttttcattaagtgttcattacataagagttatatataa |
28296464 |
T |
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| Q |
108 |
aagtacatttatatctataataaggaggcataaaaaacttatacataatatttggaaccctagactttttgcatctttgaaattc |
192 |
Q |
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| T |
28296465 |
aagtacatttatatctataataaggaggcatagaaaacttatacataatatttggaaccccacactttttgtatctttgaaattc |
28296549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 28297408 - 28297491
Alignment:
| Q |
184 |
ttgaaattcacatgacaatcaaacaattttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttc |
267 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28297408 |
ttgaaattcacatgacaatcaaacatttttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttc |
28297491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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