View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12816_high_16 (Length: 240)

Name: NF12816_high_16
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12816_high_16
NF12816_high_16
[»] chr3 (1 HSPs)
chr3 (1-222)||(38626496-38626717)
[»] scaffold0393 (1 HSPs)
scaffold0393 (11-76)||(12378-12444)
[»] chr5 (3 HSPs)
chr5 (11-74)||(10898672-10898736)
chr5 (14-83)||(38045390-38045460)
chr5 (11-75)||(29922575-29922640)
[»] chr4 (1 HSPs)
chr4 (11-73)||(2171738-2171801)
[»] chr7 (1 HSPs)
chr7 (11-79)||(45369107-45369176)
[»] chr8 (1 HSPs)
chr8 (31-74)||(5997374-5997418)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38626717 - 38626496
Alignment:
Q  1 aattcaagtctcaagttataatcaattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaaatttgctccatccaaaattgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626717 aattcaagtctcaagttataatcaattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaaatttgctccatccaaaattgaga 38626618  T
Q  101 cgaaacacacacataattttctgtgtgtctttaattttttaatcttatgttgtttctttcgtgtacctgctagtgttaaacatggcttgtttcttgttcc 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626617 cgaaacgcacacataattttctgtgtgtctttaattttttaatcttatgttgtttctttcgtgtacctgctagtgttaaacatggcttgtttcttgttcc 38626518  T
Q  201 agattgatttgatgggattatt 222  Q
    ||||||||||||||||||||||    
T  38626517 agattgatttgatgggattatt 38626496  T

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Target: scaffold0393 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 12378 - 12444
Alignment:
Q  11 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataa 76  Q
    |||||||| ||||| |||  ||||||||||||||| |||| || |||||||||||||||||||||||    
T  12378 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 12444  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 10898736 - 10898672
Alignment:
Q  11 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaat 74  Q
    |||||||| |||||||||  |||||||||||||||||||| || | || ||||||||||||||||    
T  10898736 tcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaat 10898672  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 38045460 - 38045390
Alignment:
Q  14 agttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaatttgc 83  Q
    ||||| ||||||| || ||||||||||||||| |||| || ||||| ||||||||||||||| || |||||    
T  38045460 agttaaaatcaataccggaggcaaaatcaattctacttgagaacattcaaacatgtcaaaatcaattttgc 38045390  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 29922640 - 29922575
Alignment:
Q  11 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaata 75  Q
    |||||||| |||||||||  ||||||||||||||| |||| || ||||  ||||||||||||||||    
T  29922640 tcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaata 29922575  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 2171801 - 2171738
Alignment:
Q  11 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaa 73  Q
    |||||||  |||||||||| | |||||| ||||||||||| || ||||||||||||||||||||    
T  2171801 tcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 45369176 - 45369107
Alignment:
Q  11 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaat 79  Q
    |||||||| |||||||||  || |||||||||||| |||| || ||||||||||||| ||||||| ||||    
T  45369176 tcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaat 45369107  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 5997374 - 5997418
Alignment:
Q  31 gaggcaaaatcaattttactggaaa-catccaaacatgtcaaaat 74  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||    
T  5997374 gaggcaaaatcaattttactcaaaaacatccaaacatgtcaaaat 5997418  T

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