View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12816_high_2 (Length: 635)
Name: NF12816_high_2
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 20 - 621
Target Start/End: Complemental strand, 3307815 - 3307214
Alignment:
| Q |
20 |
taagcctccaggttccatactcaattgaataacttgtaacccttatgccttcaggataaccaatgaagacacaatcgagagctctaacttcaaacctcca |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307815 |
taagcctccaggttccatactcaattcaataacttgtaacccttatgccttctggataaccaatgaagacacaatcgagagctctaacttcaaacctcca |
3307716 |
T |
|
| Q |
120 |
caggtgtcttgaaatttattcatattgacggacatatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccaactccaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3307715 |
taggtgtcttgaaatttattcatattgacggacatatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccagctccaaa |
3307616 |
T |
|
| Q |
220 |
aatttgcatctaatatggttcaaaatgatccattcatgcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaattga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3307615 |
aatttgcatctaatatggttcaaaatgatccattcattcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaattaa |
3307516 |
T |
|
| Q |
320 |
actcataacttgaaccttgcactttgtgttatttctaagtgaacgagtccaccttctttcaactccaaagtctcannnnnnnnncttggacacatgtgat |
419 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
3307515 |
actcataacttgaaccttgcactctgtgttatttctaagtgaacgagtccaccttctttcaactccaaagtctctattttttttcctggacacatgtgat |
3307416 |
T |
|
| Q |
420 |
aagagcatctacataccatgacctaactcatttttggtttcccaacttgtcaccaccactacccgcactctcataatcctcctccgaggtaatctcatct |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
3307415 |
aagagcatctacataccatgacctaactcatttttggtttcccaacttgtcaccaccactacccacactctcataatcctcctccgaggcaatctcatct |
3307316 |
T |
|
| Q |
520 |
tgaacggaatccttttttcccctttcttgtgacaattattcttgaagttattggtcttgtgacaattgaagcatttatactttgttttttcattcccctt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307315 |
tgaacggaatccttttttcccctttcttgtgacaattattcttgaagttattggtcttgtgacaattgaagcatttatactttgttttttcattcccctt |
3307216 |
T |
|
| Q |
620 |
tg |
621 |
Q |
| |
|
|| |
|
|
| T |
3307215 |
tg |
3307214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 601
Target Start/End: Complemental strand, 16549635 - 16549593
Alignment:
| Q |
559 |
tcttgaagttattggtcttgtgacaattgaagcatttatactt |
601 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
16549635 |
tcttgaagtgattggtcttgtgacaattgaagcatttgtactt |
16549593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University