View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12816_high_6 (Length: 502)
Name: NF12816_high_6
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 486
Target Start/End: Original strand, 6165623 - 6166104
Alignment:
| Q |
10 |
gcagagaaatgagggaattctaagttgggttgatgttccaataagannnnnnnnggtaagatgttccaataagataatggcatacttgccttttctcttt |
109 |
Q |
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| T |
6165623 |
gcagagaaatgagggaattctaagttgggttgatgttccaataagattttttttggtaagatgttccaataagataatggcatacttgccttttctcttt |
6165722 |
T |
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| Q |
110 |
ataatgaaattataaatagagcaactaatctagaagttagagtcaacatatcc------gttcaaaagacccaatcgtcataacaatacaattgttagct |
203 |
Q |
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| T |
6165723 |
ataatgaaataataaatagagcaactaatctagaagttagagtcaacatatccatactcgttcaaaagacccaatcgtcataacattacaattgttagct |
6165822 |
T |
|
| Q |
204 |
cgattgtttaacccaacacaagtgtagctgattccttcttatttatactcactcaactatcttagtgtaagttaggtcttatggactaaatatttgatac |
303 |
Q |
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| T |
6165823 |
cgattgtttaacccaacacaagtgtagctgattccttcttatttatactcactcaactatcttagtgtaagttaggtcttacggactaaatatttgatac |
6165922 |
T |
|
| Q |
304 |
aaatacaaactatgaacgtcaaacctaaaatattaaggtcctcttaatgaccgataattgctactcaacaacatgcttctggagttagtttggaacttgt |
403 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6165923 |
aaatacagactatgaacgtcaaacctaaaatattaaggtgctcttaatgaccgataattgctactcaacaacatgcttctggagttagtttggaacttgt |
6166022 |
T |
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| Q |
404 |
gttatgatcatagaatttagcttgtgaattagtcaagtgagaaaatcacatgattacaatacagtcgaccttaaaagtattag |
486 |
Q |
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| T |
6166023 |
gttatgatcatagaatttagcttgtgaattagtcaagtgagaaaatcacatgattac-ttacagtcgaccttaaaagtattag |
6166104 |
T |
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