View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12816_high_8 (Length: 467)

Name: NF12816_high_8
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12816_high_8
NF12816_high_8
[»] chr1 (2 HSPs)
chr1 (19-457)||(46632754-46633190)
chr1 (205-439)||(15507065-15507302)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 46633190 - 46632754
Alignment:
Q  19 ttaacacctcaatgcttacgtttttgttggtcttgcaatgtcacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633190 ttaacacctcaatgcttacgtttttgttggtcttgcaatgtgacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgca 46633091  T
Q  119 atcaaaacaatgtaacaaagcaattaatgacttatccgatatannnnnnnnncttcttcaaacgattgtatgataaaaactagtactactcacatcatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  46633090 atcaaaacaatgtaacaaagcaattaatgacttatccgatatatttttttt--ttcttcaaacgattgtatgataaaaactagtactactcacatcatat 46632993  T
Q  219 gcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgctgtctttgagtgaaactgccgatctgtcaagcttaattg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46632992 gcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgctgtctttgagtgaaaccgccgatctgtcaagcttaattg 46632893  T
Q  319 accatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46632892 accatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattct 46632793  T
Q  419 ccgccgactcagttgcctctcaaatgaatcaggcctttg 457  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46632792 ccgccgactcagttgcctctcaaatgaatcaggcctttg 46632754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 439
Target Start/End: Complemental strand, 15507302 - 15507065
Alignment:
Q  205 tactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcga---accacactcgctgtctttgagtgaaactgccga 301  Q
    ||||||||  ||||| |||||| ||| ||||||| |||| |||||| || | ||||||||| ||   ||||| ||| || || ||||||||||||   ||    
T  15507302 tactcacactatatgaaacaagagatttgcagtagttagagtttgttagtactgtacttgtggagccaccaccctcactctcattgagtgaaactaagga 15507203  T
Q  302 tctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttctt 401  Q
     || |||||||| ||||||||||||||||||||||| || ||||   |||| || |||||||||||||||  ||||||||||||||| ||||||||||||    
T  15507202 cctatcaagctttattgaccatggatattggtagttttgtgcagtgacaccaacctgtgaagatgacctcatcatcctcactggccttggaacatttctt 15507103  T
Q  402 ccttcaaccgaaattctccgccgactcagttgcctctc 439  Q
    ||||| || |||  ||| ||||||||| |||| |||||    
T  15507102 ccttccacagaagctcttcgccgactcggttgtctctc 15507065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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