View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12816_low_3 (Length: 589)
Name: NF12816_low_3
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 22 - 581
Target Start/End: Complemental strand, 47382925 - 47382364
Alignment:
| Q |
22 |
cagttcttcccttactatctgttagcctcccatcttccaggatttgaagcatcatgttgaagacatcacgacgggctttctcaatctcatcaaagagtac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |
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| T |
47382925 |
cagttcttcccttactatctgttagcctcccatcttccagaatttgaagcatcatattgaagacatcaggatgggctttctcaatctcatcaaagagtac |
47382826 |
T |
|
| Q |
122 |
aacagtgtagggacagcgccgatctgcctcagtcagttgaccaccctcggtataaccaacatatccagaaggtgagcagaggagtttggagactgtgcgt |
221 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||| | |
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|
| T |
47382825 |
aacagtatagggacggcgccgaactgcctcagtcaattgaccaccctcggtataaccaacatatccaggaggtgaaccgatgagtttggagactgtgtgc |
47382726 |
T |
|
| Q |
222 |
cgttccataaattcactcatgtcaagccaaatcatagcatcttcagaaccaaagtagtatgaggccaatgctttggccaactcggacttccccaaaccgg |
321 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| || |||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||| | |
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|
| T |
47382725 |
cgttccataaattcgctcatgtcaagccgaatcatggcttcttcagatccaaagtagtatgaggccaatgttttggccaactcagacttccccacaccag |
47382626 |
T |
|
| Q |
322 |
tagggccagaaaagatgaagctggcaattggccggttagggttcttaagtccaacacgagctcgacagatagcgcagctaa-ggcttctacttcttcgtg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||| |||||||||| |||| || |
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|
| T |
47382625 |
tagggccagaaaagatgaagctggcaatcggccggttagggttcttaagtccaacacgagctcggcggatagcacggctaatggcttctactgcttcatg |
47382526 |
T |
|
| Q |
421 |
ctggccaataatgtgtttgtgtaagctctcttccatcttgagaaggtgatcggattcaacaaccta-actttgtcaacagggacaccagtccaggcggta |
519 |
Q |
| |
|
||| ||||||| | ||||||||||| |||||||||||||||||||| |||| ||||| |||| | ||||| |||||||||| |||||||||||||| | |
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|
| T |
47382525 |
ctgaccaataacgcgtttgtgtaaggtctcttccatcttgagaaggcgatcagattcgtcaactgagactttatcaacagggataccagtccaggcggca |
47382426 |
T |
|
| Q |
520 |
acaatattttgtatgacaacttcagtcacaagtgcacctatatctcctgtctcactctctgc |
581 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
47382425 |
acaatatgttgtatgtcaacttcagtcacaagtgcacctacatctcctgcctcactctctgc |
47382364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 33 - 582
Target Start/End: Complemental strand, 45115863 - 45115312
Alignment:
| Q |
33 |
ttactatctgttagcctcccatcttccaggatttgaagcatcatgttgaagacatcacgacgggctttctcaatctcatcaaagagtacaacagtgtagg |
132 |
Q |
| |
|
||||| || ||||| || |||||||| ||||| ||||||||||||||||| |||||| || | |||||||| |||||||||||||||||||||||||| | |
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|
| T |
45115863 |
ttactgtccgttagtcttccatcttcaaggatctgaagcatcatgttgaatacatcaggatgagctttctcgatctcatcaaagagtacaacagtgtaag |
45115764 |
T |
|
| Q |
133 |
gacagcgccgatctgcctcagtcagttgaccaccctcggtataaccaacatatccagaaggtgagcagaggagtttggagactgtgcgtcgttccataaa |
232 |
Q |
| |
|
||| || ||| |||| ||||||| |||||||| ||||| |||||||||||||||| |||||| | | ||||||||||| ||| | | ||||||||| |
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|
| T |
45115763 |
gacgacgacgaactgcttcagtcaactgaccaccttcggtgtaaccaacatatccaggaggtgaaccaataagtttggagacagtgtgcctttccataaa |
45115664 |
T |
|
| Q |
233 |
ttcactcatgtcaagccaaatcatagcatcttcagaaccaaagtagtatgaggccaatgctttggccaactcggacttccccaaaccggtagggccagaa |
332 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||| ||||||||||| | ||||||||||||||||| || |||||||||| ||| || || |||||| |
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|
| T |
45115663 |
ctcactcatgtcaagacgaatcatggcttcttcagagccaaagtagtaggcagccaatgctttggccaattcagacttccccacaccagttggaccagaa |
45115564 |
T |
|
| Q |
333 |
aagatgaagctggcaattggccggttagggttcttaagtccaacacgagctcgacagatagcgcagctaa-ggcttctacttcttcgtgctggccaataa |
431 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| | |||||| || ||||||| |||||| | ||||| |||||||||| |||| | ||| ||||| | |
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|
| T |
45115563 |
aagatgaagctagcaattggacggttagggttcttcaatccaacccgtgctcgacggatagcccggctaatggcttctactgcttcatcctgaccaatga |
45115464 |
T |
|
| Q |
432 |
tgtgtttgtgtaagctctcttccatcttgagaaggtgatcggattcaacaaccta-actttgtcaacagggacaccagtccaggcggtaacaatattttg |
530 |
Q |
| |
|
| |||||||| | |||||||||||||| ||| |||| |||||| | | | ||||| |||||||| | || ||||||| || ||||||| ||| |
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|
| T |
45115463 |
ctcgcttgtgtaaagtatcttccatcttgaggaggcgatcagattcatctgctgagactttatcaacaggaatgcctgtccaggaggacacaatatgttg |
45115364 |
T |
|
| Q |
531 |
tatgacaacttcagtcacaagtgcacctatatctcctgtctcactctctgct |
582 |
Q |
| |
|
||| ||||||||||||||| | |||| |||| ||| ||||||||||||| |
|
|
| T |
45115363 |
aatgtcaacttcagtcacaataggaccttcatctgctgcctcactctctgct |
45115312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 488 - 581
Target Start/End: Complemental strand, 47817987 - 47817894
Alignment:
| Q |
488 |
ctttgtcaacagggacaccagtccaggcggtaacaatattttgtatgacaacttcagtcacaagtgcacctatatctcctgtctcactctctgc |
581 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
47817987 |
ctttatcaacagggataccagtccaggcggcaacaatatgttgtatgtcaacttcagtcacaagtgcaactacatctcctgcctcactctctgc |
47817894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 47818020 - 47817985
Alignment:
| Q |
22 |
cagttcttcccttactatctgttagcctcccatctt |
57 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47818020 |
cagttcttcccttactatcagttagcctcccatctt |
47817985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 22 - 581
Target Start/End: Complemental strand, 40245639 - 40245078
Alignment:
| Q |
22 |
cagttcttcccttactatctgttagcctcccatcttccaggatttgaagcatcatgttgaagacatcacgacgggctttctcaatctcatcaaagagtac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
40245639 |
cagttcttcccttactatctgttagcctcccatcttccaggatttgaagcatcatgttgaagacatcaggatgggctttctcaatctcatcaaagagtac |
40245540 |
T |
|
| Q |
122 |
aacagtgtagggacagcgccgatctgcctcagtcagttgaccaccctcggtataaccaacatatccagaaggtgagcagaggagtttggagactgtgcgt |
221 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||| | | |||||||||||||||| | |
|
|
| T |
40245539 |
aaccgtgtagggacgacgccgaactgcctcagtcagttgaccaccctcagtataaccaacatatcctggaggtgaaccaatgagtttggagactgtgtgc |
40245440 |
T |
|
| Q |
222 |
cgttccataaattcactcatgtcaagccaaatcatagcatcttcagaaccaaagtagtatgaggccaatgctttggccaactcggacttccccaaaccgg |
321 |
Q |
| |
|
| |||||| ||||||||||||||||| | |||||| || |||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||| ||| | |
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|
| T |
40245439 |
ctttccatgaattcactcatgtcaagacgaatcatggcttcttcagatccaaagtagtatgaggccagtgccttggccaactcagacttccccacaccag |
40245340 |
T |
|
| Q |
322 |
tagggccagaaaagatgaagctggcaattggccggttagggttcttaagtccaacacgagctcgacagatagcgcagctaa-ggcttctacttcttcgtg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||| |||| || |
|
|
| T |
40245339 |
tagggccagaaaagatgaagctggcaattggcctgttagggttcttaagtccaacacgagctcgacggatagccctgctaatggcttctactgcttcatg |
40245240 |
T |
|
| Q |
421 |
ctggccaataatgtgtttgtgtaagctctcttccatcttgagaaggtgatcggattcaacaaccta-actttgtcaacagggacaccagtccaggcggta |
519 |
Q |
| |
|
||| ||||||||| |||||||||| | ||||||||||||||||| |||| ||||| ||||| | |||||||||||||||| ||||||||||| || |
|
|
| T |
40245239 |
ctgaccaataatgcgtttgtgtaatgtgtcttccatcttgagaagacgatcagattcgtcaaccgagactttgtcaacagggataccagtccaggaggcg |
40245140 |
T |
|
| Q |
520 |
acaatattttgtatgacaacttcagtcacaagtgcacctatatctcctgtctcactctctgc |
581 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
40245139 |
acaatatgttgtatgtcaacttcagtcacaagtgcacctacatctcctgcctcactctctgc |
40245078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 34055035 - 34055271
Alignment:
| Q |
22 |
cagttcttcccttactatctgttagcctcccatcttccaggatttgaagcatcatgttgaagacatcacgacgggctttctcaatctcatcaaagagtac |
121 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
34055035 |
cagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaagggtac |
34055134 |
T |
|
| Q |
122 |
aacagtgtagggacagcgccgatctgcctcagtcagttgaccaccctcggtataaccaacatatccagaaggtgagcagaggagtttggagactgtgcgt |
221 |
Q |
| |
|
|||||||||||||| ||||| | || ||||||||||||||||||||| |||||||||| ||||| || | |||||| || ||||||||||||||||| | |
|
|
| T |
34055135 |
aacagtgtagggacggcgccaaacttcctcagtcagttgaccacccttggtataaccagcatatgcatgaagtgagccgatgagtttggagactgtgctt |
34055234 |
T |
|
| Q |
222 |
cgttccataaattcactcatgtcaagccaaatcatag |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34055235 |
cgttccataaattcactcatgtcaagccaaatcatag |
34055271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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