View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12816_low_4 (Length: 586)

Name: NF12816_low_4
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12816_low_4
NF12816_low_4
[»] chr4 (7 HSPs)
chr4 (45-339)||(47644907-47645202)
chr4 (402-543)||(47645265-47645406)
chr4 (429-465)||(31805138-31805174)
chr4 (430-465)||(32303318-32303353)
chr4 (430-468)||(52487302-52487340)
chr4 (431-465)||(54591746-54591780)
chr4 (402-447)||(18539281-18539326)
[»] chr6 (2 HSPs)
chr6 (430-468)||(3401084-3401122)
chr6 (415-465)||(23775955-23776005)
[»] chr2 (4 HSPs)
chr2 (427-467)||(4059379-4059419)
chr2 (429-465)||(10288153-10288189)
chr2 (430-465)||(8329911-8329946)
chr2 (411-467)||(9365921-9365977)
[»] chr1 (8 HSPs)
chr1 (409-465)||(30198009-30198065)
chr1 (430-465)||(34157809-34157844)
chr1 (415-465)||(3697161-3697211)
chr1 (430-468)||(44161805-44161843)
chr1 (427-464)||(5043096-5043133)
chr1 (430-467)||(25994949-25994986)
chr1 (429-465)||(38019536-38019572)
chr1 (429-465)||(45350127-45350163)
[»] chr8 (3 HSPs)
chr8 (430-465)||(33115908-33115943)
chr8 (427-465)||(29913567-29913605)
chr8 (430-467)||(23587636-23587673)
[»] chr5 (3 HSPs)
chr5 (429-467)||(17489349-17489387)
chr5 (436-464)||(19526749-19526777)
chr5 (429-465)||(42964100-42964136)
[»] chr3 (5 HSPs)
chr3 (430-471)||(4189734-4189775)
chr3 (431-464)||(35176014-35176047)
chr3 (427-468)||(35987248-35987289)
chr3 (428-464)||(2381556-2381592)
chr3 (429-465)||(29800581-29800617)
[»] chr7 (5 HSPs)
chr7 (428-464)||(4560507-4560543)
chr7 (409-465)||(18227873-18227929)
chr7 (429-469)||(27125584-27125624)
chr7 (408-460)||(31480272-31480324)
chr7 (429-465)||(49167887-49167923)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 45 - 339
Target Start/End: Original strand, 47644907 - 47645202
Alignment:
Q  45 atggctcgacatcctctcatgtcgatttcaaccatatattcctcaatccattcacctgcaaaacgtagacattgacatccaatgagacagtgacttcaag 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47644907 atggctcgacatcctctcatgtcgatttcaaccatatattcctcaatccattcacctgcaaaacgtagacattgacatccaatgagacagtgacttcaag 47645006  T
Q  145 ttcacgggcacaaacacgacaatatcaataatttataggaaacaacactactaccaaataaatcacgaatccacatatcattccatgtgcttttcttggt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47645007 ttcacgggcacaaacacgacaatatcaataatttataggaaacaacattactaccaaataaatcacgaatccacatatcattccatgtgcttttcttggt 47645106  T
Q  245 ttgtctgacaatgttc-taattttaaataattgctaaaatagtaacacatatcacaaaaataaattatatatgtatgaacattttttaaacaactg 339  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47645107 ttgtctgacaatgttcataattttaaataattgctaaaatagtaacacaaatcacaaaaataaattatatatgtatgaacattttttaaacaactg 47645202  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 402 - 543
Target Start/End: Original strand, 47645265 - 47645406
Alignment:
Q  402 caatgtaagtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcatttatcagatatacaatactagctcatcaaaaaccttat 501  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  47645265 caatgtaagtatgaaagagaattattttaaaaattatcataaaataattatataaatatcatttatcagatatacaatactagctcatccaaaaccttat 47645364  T
Q  502 attggttttctattttctttgcttggaaaataatatagataa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47645365 attggttttctattttctttgcttggaaaataatatagataa 47645406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 31805138 - 31805174
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31805138 taaaaattatcataaaatagttatacaaatatcattt 31805174  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Original strand, 32303318 - 32303353
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32303318 aaaaattatcacaaaatagttgtacaaatatcattt 32303353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 468
Target Start/End: Original strand, 52487302 - 52487340
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcatttatc 468  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  52487302 aaaaattatcacaaattagttgtacaaatatcatttatc 52487340  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 465
Target Start/End: Original strand, 54591746 - 54591780
Alignment:
Q  431 aaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||||||||||||| |||||||||||||||||    
T  54591746 aaaattatcacaaaataattatacaaatatcattt 54591780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 18539326 - 18539281
Alignment:
Q  402 caatgtaagtatgaaagagaattattttaaaaattatcacaaaata 447  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||    
T  18539326 caatgtaagtataaaagataattattttaaaaattgtcgcaaaata 18539281  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 468
Target Start/End: Complemental strand, 3401122 - 3401084
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcatttatc 468  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3401122 aaaaattatcacaaaatagttgtacaaatatcatttatc 3401084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 23775955 - 23776005
Alignment:
Q  415 aaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||| |||||||||||||||||||| || || |||||||||||    
T  23775955 aaagagaattatcttaaaaattatcacaaaataattgtataaatatcattt 23776005  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 4059379 - 4059419
Alignment:
Q  427 tttaaaaattatcacaaaatagttatacaaatatcatttat 467  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  4059379 tttaaaaattatcataaaatagttatacaaatatcgtttat 4059419  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 10288189 - 10288153
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10288189 taaaaattatcacaaaatagttgtacaaatatcattt 10288153  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Original strand, 8329911 - 8329946
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||||||||||||||| |||||||||||    
T  8329911 aaaaattatcacaaaatagttatataaatatcattt 8329946  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 9365977 - 9365921
Alignment:
Q  411 tatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcatttat 467  Q
    ||||| ||||| || ||||||||||| ||| ||||||||| ||||||||| ||||||    
T  9365977 tatgagagagagttgttttaaaaattgtcaaaaaatagttgtacaaatattatttat 9365921  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 30198065 - 30198009
Alignment:
Q  409 agtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||||||| |||| ||| |||| || ||||||||||||| ||||||||||||||    
T  30198065 agtatgaaagataattgtttaaaaatttgtcacaaaatagttgtacaaatatcattt 30198009  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Complemental strand, 34157844 - 34157809
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||||||||| |||||||||||||||||    
T  34157844 aaaaattatcacaaaataattatacaaatatcattt 34157809  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 3697161 - 3697211
Alignment:
Q  415 aaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||||||||||||||| || |||  |||||||| ||||||||||||||    
T  3697161 aaagagaattattttaaaagttgtcaacaaatagttgtacaaatatcattt 3697211  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 468
Target Start/End: Original strand, 44161805 - 44161843
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcatttatc 468  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  44161805 aaaaattataccaaaatagttatacaaatatcatttatc 44161843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 5043133 - 5043096
Alignment:
Q  427 tttaaaaattatcacaaaatagttatacaaatatcatt 464  Q
    ||||||||||||||||||||| || |||||||||||||    
T  5043133 tttaaaaattatcacaaaataattgtacaaatatcatt 5043096  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Original strand, 25994949 - 25994986
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcatttat 467  Q
    |||||||||||||||||| || ||||||||||||||||    
T  25994949 aaaaattatcacaaaataattgtacaaatatcatttat 25994986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 38019536 - 38019572
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  38019536 taaaagttatcacaaaataattatacaaatatcattt 38019572  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 45350127 - 45350163
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||||||||||||||| || ||||||||||||||    
T  45350127 taaaaattatcacaaaataattgtacaaatatcattt 45350163  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Complemental strand, 33115943 - 33115908
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||||||||| |||||||||||||||||    
T  33115943 aaaaattatcacaaaataattatacaaatatcattt 33115908  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 29913605 - 29913567
Alignment:
Q  427 tttaaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  29913605 tttaaaaattatcataaaatagttgtacaaatatcattt 29913567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Complemental strand, 23587673 - 23587636
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcatttat 467  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  23587673 aaaaattgtcacaaaattgttatacaaatatcatttat 23587636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 17489387 - 17489349
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcatttat 467  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  17489387 taaaaattatcaaaaaatagttgtacaaatatcatttat 17489349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 464
Target Start/End: Complemental strand, 19526777 - 19526749
Alignment:
Q  436 tatcacaaaatagttatacaaatatcatt 464  Q
    |||||||||||||||||||||||||||||    
T  19526777 tatcacaaaatagttatacaaatatcatt 19526749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 42964100 - 42964136
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  42964100 taaaaattatcaaaaaatagttatgcaaatatcattt 42964136  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Complemental strand, 4189775 - 4189734
Alignment:
Q  430 aaaaattatcacaaaatagttatacaaatatcatttatcaga 471  Q
    |||||||||||||||||| || |||||||||||||| |||||    
T  4189775 aaaaattatcacaaaataattctacaaatatcatttctcaga 4189734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Original strand, 35176014 - 35176047
Alignment:
Q  431 aaaattatcacaaaatagttatacaaatatcatt 464  Q
    ||||||||||||||||||||||| ||||||||||    
T  35176014 aaaattatcacaaaatagttataaaaatatcatt 35176047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 468
Target Start/End: Complemental strand, 35987289 - 35987248
Alignment:
Q  427 tttaaaaattatcacaaaatagttatacaaatatcatttatc 468  Q
    ||||||| |||||||||||||||| ||||||||||| |||||    
T  35987289 tttaaaagttatcacaaaatagttgtacaaatatcacttatc 35987248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 464
Target Start/End: Complemental strand, 2381592 - 2381556
Alignment:
Q  428 ttaaaaattatcacaaaatagttatacaaatatcatt 464  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  2381592 ttaaaaaatatcacaaaatagttatataaatatcatt 2381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 29800581 - 29800617
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  29800581 taaaaattatcacaaagtagttgtacaaatatcattt 29800617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 4560507 - 4560543
Alignment:
Q  428 ttaaaaattatcacaaaatagttatacaaatatcatt 464  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4560507 ttaaaaattatcacaaaatagttgcacaaatatcatt 4560543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 18227873 - 18227929
Alignment:
Q  409 agtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||| |||||  ||||| ||||||||||| ||||||||| ||||| ||||||||    
T  18227873 agtatgagagagagatatttaaaaaattatcataaaatagttgtacaactatcattt 18227929  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 469
Target Start/End: Original strand, 27125584 - 27125624
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcatttatca 469  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  27125584 taaaaattattacaaaatagttgtagaaatatcatttatca 27125624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 31480272 - 31480324
Alignment:
Q  408 aagtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatat 460  Q
    |||||| ||| |||||||||  ||||||||| | |||||||||||||||||||    
T  31480272 aagtataaaaaagaattattacaaaaattattataaaatagttatacaaatat 31480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 49167887 - 49167923
Alignment:
Q  429 taaaaattatcacaaaatagttatacaaatatcattt 465  Q
    ||||||||||||||||||| || ||||||||||||||    
T  49167887 taaaaattatcacaaaataattgtacaaatatcattt 49167923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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