View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12816_low_5 (Length: 558)
Name: NF12816_low_5
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 38115088 - 38114644
Alignment:
| Q |
1 |
ttgtgtggaaggttggagaggttgcaggcggagagaacggtggcccaagcgacgtgatctcgttgaggcaatgcgtcgaacagtttgagtgcatctttga |
100 |
Q |
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| T |
38115088 |
ttgtgtggaaggttggagaggttgcaggcggagagaacggtggcccaagcgacgtgatcttgttgaggcaatgcgtcgaacagtttgagtgcatctttga |
38114989 |
T |
|
| Q |
101 |
ggaggccacatttgccatatgcgtcaatgagagttttggggaatggatggtggtgattgagaccagatttgatgatttgtgcgtggtgtttcttggcaat |
200 |
Q |
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| T |
38114988 |
ggaggccacatttgccatatgcgtcaatgagagttttggggaatggatggtggtgattgagaccagatttgatgatttgtgcgtggagtttcttggcaat |
38114889 |
T |
|
| Q |
201 |
gaatggattcttgcgtcccaaggaaaagagttgagatttgagtgcgagtacagtgggagagtgagagaatgacattcatcaacgttgttattttgtcaag |
300 |
Q |
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| T |
38114888 |
aaatggattcttgcgtcccaaggaaaagagttgagatttgagtgcgagtacagtgggagagtgagagaatgacattcatcaacgctgttattttgtcaag |
38114789 |
T |
|
| Q |
301 |
ccgtaagttaa-ccctcggagttggtcggatgatgtaagcttgtaatgttggatttcttcaattattattcacaaacccctcaaacttttgaaaatatac |
399 |
Q |
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| T |
38114788 |
ccgtaagttaacccctcggagttggtcggatgatgtaagcttgtaatgttggatttcttcaattattattcacaaacccctcaaacttttgaaaatatac |
38114689 |
T |
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| Q |
400 |
atataggttggtaactttggaaccattcgaaagttaactccttat |
444 |
Q |
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| T |
38114688 |
atataggttggtaactttggaatgattcgaaagttaactccttat |
38114644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 441 - 542
Target Start/End: Complemental strand, 38114605 - 38114504
Alignment:
| Q |
441 |
ttattgcttaagttcaagagttacgaaccaatatgcaattatacatacctctgaaacaaaataaaaaaccataacttgtgtttcaattcacattctcttc |
540 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
38114605 |
ttatcgcttaagttcatgagttacgaaccaatatgcaattatacatatctctgaaacaaaataaaaaaccatcacttatgtttcaattcactttctcttc |
38114506 |
T |
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| Q |
541 |
ct |
542 |
Q |
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|| |
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| T |
38114505 |
ct |
38114504 |
T |
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