View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12816_low_7 (Length: 490)
Name: NF12816_low_7
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 50531591 - 50531268
Alignment:
| Q |
18 |
cttattttctttgtgtgtacaaagacgtgttgttatgtgacatttgacaacaatctaattaaggacctctttcgtacatgaaagtgatttttacatacat |
117 |
Q |
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| T |
50531591 |
cttattttctttgtgtgtacaacgacgtgttgttatgtgacgtttgacaacaatctaattaaggacctctttcgtacatgaaagtgatttttacatacat |
50531492 |
T |
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| Q |
118 |
tgaaattaattggaatcaaaataataaaaggacttgtggattaagttatccacttaatgcataacatggttagaannnnnnnnnnnctttggtaaacacg |
217 |
Q |
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| T |
50531491 |
tgaaattaattggaatcaaaataataaaaggacttgtggattaagttatccacttaatgcataacatggttagaa--tttttttttctttggtaaacacg |
50531394 |
T |
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| Q |
218 |
gtcagcaatctattatggctaaaggaatcaattttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtat |
317 |
Q |
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| T |
50531393 |
gtcagcaatctattatggctaaaggaatcaaatttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtat |
50531294 |
T |
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| Q |
318 |
agacttcaaatttcatttccgtaagc |
343 |
Q |
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| T |
50531293 |
agacttcaaatttcatttccgtaagc |
50531268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 360 - 480
Target Start/End: Complemental strand, 50531225 - 50531105
Alignment:
| Q |
360 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaacgatggtt |
459 |
Q |
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| T |
50531225 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaatgatggtt |
50531126 |
T |
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| Q |
460 |
aaaggttcatttcatctctct |
480 |
Q |
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| T |
50531125 |
aaaggttcatttcatatctct |
50531105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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