View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12816_low_8 (Length: 467)

Name: NF12816_low_8
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12816_low_8
NF12816_low_8
[»] chr1 (2 HSPs)
chr1 (19-457)||(46632754-46633190)
chr1 (205-439)||(15507065-15507302)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 46633190 - 46632754
Alignment:
Q  19 ttaacacctcaatgcttacgtttttgttggtcttgcaatgtcacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633190 ttaacacctcaatgcttacgtttttgttggtcttgcaatgtgacttctattttagtgttgcacaaggtacacactcagtacctatctccctctggctgca 46633091  T
Q  119 atcaaaacaatgtaacaaagcaattaatgacttatccgatatannnnnnnnncttcttcaaacgattgtatgataaaaactagtactactcacatcatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  46633090 atcaaaacaatgtaacaaagcaattaatgacttatccgatatatttttttt--ttcttcaaacgattgtatgataaaaactagtactactcacatcatat 46632993  T
Q  219 gcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgctgtctttgagtgaaactgccgatctgtcaagcttaattg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46632992 gcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcgaaccacactcgctgtctttgagtgaaaccgccgatctgtcaagcttaattg 46632893  T
Q  319 accatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattct 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46632892 accatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttcttccttcaaccgaaattct 46632793  T
Q  419 ccgccgactcagttgcctctcaaatgaatcaggcctttg 457  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46632792 ccgccgactcagttgcctctcaaatgaatcaggcctttg 46632754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 439
Target Start/End: Complemental strand, 15507302 - 15507065
Alignment:
Q  205 tactcacatcatatgcaacaagggatctgcagtaattagtgtttgtgagcattgtacttgtcga---accacactcgctgtctttgagtgaaactgccga 301  Q
    ||||||||  ||||| |||||| ||| ||||||| |||| |||||| || | ||||||||| ||   ||||| ||| || || ||||||||||||   ||    
T  15507302 tactcacactatatgaaacaagagatttgcagtagttagagtttgttagtactgtacttgtggagccaccaccctcactctcattgagtgaaactaagga 15507203  T
Q  302 tctgtcaagcttaattgaccatggatattggtagttctgagcagctgcacctacttgtgaagatgacctctgcatcctcactggcctaggaacatttctt 401  Q
     || |||||||| ||||||||||||||||||||||| || ||||   |||| || |||||||||||||||  ||||||||||||||| ||||||||||||    
T  15507202 cctatcaagctttattgaccatggatattggtagttttgtgcagtgacaccaacctgtgaagatgacctcatcatcctcactggccttggaacatttctt 15507103  T
Q  402 ccttcaaccgaaattctccgccgactcagttgcctctc 439  Q
    ||||| || |||  ||| ||||||||| |||| |||||    
T  15507102 ccttccacagaagctcttcgccgactcggttgtctctc 15507065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University