View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12816_low_9 (Length: 442)
Name: NF12816_low_9
Description: NF12816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12816_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 37728270 - 37727855
Alignment:
| Q |
18 |
gagtttgatgatgatcgatgtgtaagtcaatacaa-cattagatatacaaacaactaaaattctaaaagggaaaagctacatgtggtcacactgagtatg |
116 |
Q |
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| T |
37728270 |
gagtttgatgatgatcgatatgtaagtcaatacaaacattagatatacaaacaactaaaattctaaaagggaaaagctacatgtggtcacactgagtatg |
37728171 |
T |
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| Q |
117 |
cctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcacaagatccttccatccgattccga |
216 |
Q |
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| T |
37728170 |
cctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcacaagatccttccatccgattccga |
37728071 |
T |
|
| Q |
217 |
ggagatcatgaaagccaaaatggtattgtaaatgacacaatccctataatcgttcaatgtctgatgcattatctatcttcccaaaggccatccaaaagat |
316 |
Q |
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| T |
37728070 |
ggagatcatgaaagccaaaatggtattgtaaatgacacaatcccaataatcgttcaatgtctgatgcattatctatcttcccaaaggccatccaaaagat |
37727971 |
T |
|
| Q |
317 |
taagcattatgtatatccatatatatgacaagtgttgtatgaagtaggaagttaagcattgcataatcgattttctttcttttgggttgggggttcatgt |
416 |
Q |
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| T |
37727970 |
taagcattatgtatatccatatatatgacaagtgttgtatgaagtaggaagttaagcattgcataatcgattttctttcttttgggttgggggttcatgt |
37727871 |
T |
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| Q |
417 |
gcatcatatgcctttg |
432 |
Q |
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| T |
37727870 |
gcatcatatgcctttg |
37727855 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 17910693 - 17910774
Alignment:
| Q |
113 |
tatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcaca |
194 |
Q |
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| T |
17910693 |
tatgcctttgatgtaacaaaagctggccagatatttgatcatctgctcaaagataagaagattaagttgttagatggtcaca |
17910774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 23286717 - 23286804
Alignment:
| Q |
106 |
cactgagtatgcctctgacataacaaaagttgactagatatttgatcatcttctcaaagataaatagattaagctattagatggtcac |
193 |
Q |
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| T |
23286717 |
cactgagtatgcctttgacacaacgaaagttggccaaatatttgatcatatgctcaaagataagcatatttggctattagatgctcac |
23286804 |
T |
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