View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12818_high_2 (Length: 299)
Name: NF12818_high_2
Description: NF12818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12818_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 44342149 - 44342271
Alignment:
| Q |
169 |
atgaggcatgtcacctaccaaatatttttgaaacgtgaaaaatgaagtgaatagtgagaaattgaataagt-agtactactcaccctacaacttggcggc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
44342149 |
atgaggcatgtcacctaccaaatatttttgaaacgtgaaaaatgaagtgaatagtgagaaattgaaaaagtaagtactactcacccaacaacttggcggc |
44342248 |
T |
|
| Q |
268 |
cacccatgttgttatatctctgc |
290 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44342249 |
cacccatgttgttatatctctgc |
44342271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 44342107 - 44342141
Alignment:
| Q |
116 |
agtgaatcgagctaaagacatgattaaatattaat |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44342107 |
agtgaatcgagctaaagacatgattaaatattaat |
44342141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University