View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12818_low_2 (Length: 428)
Name: NF12818_low_2
Description: NF12818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12818_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 42198523 - 42198106
Alignment:
| Q |
1 |
ttatttcgaacatttggttgtcagggaacattcctaaattagaagtaa----gcggattgaaaatacttgtgatggctagaaacaaatttagtggctcga |
96 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42198523 |
ttatttcgaacaactggttgtcagggaacattcctaaattagaagtaattaagcggattgaaaatacttgtgatggctagaaacaaatttagtggctcaa |
42198424 |
T |
|
| Q |
97 |
ttccaaatagtctaggggatttagcatcacttgtgactttggatctat-catcaaacaatctcactggtctaattcctgatagtttagaaaagctggagt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198423 |
ttccaaatagtctaggggatttagcatcacttgtgactttggatctattcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagt |
42198324 |
T |
|
| Q |
196 |
atatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198323 |
atatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaa |
42198224 |
T |
|
| Q |
296 |
caaactatgcggccttaacaatcaagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactcccta |
395 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198223 |
caaactatgcggccttaacaatc-----aagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactcccta |
42198129 |
T |
|
| Q |
396 |
tcatactaccaatcacaggttct |
418 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
42198128 |
tcatactaccaattacaggttct |
42198106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 42211076 - 42210697
Alignment:
| Q |
19 |
tgtcagggaacattcctaaattagaagtaagcggattgaaaatacttgtgatggctagaaacaaatttagtggctcgattccaaatagtctaggggattt |
118 |
Q |
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|||||||||||||||||||| | ||||| | ||||||||||| |||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
42211076 |
tgtcagggaacattcctaaaatcgaagttaacggattgaaaacacttatgatggcaagaaacaattttagtggctcaattccaaatagtctaggggattt |
42210977 |
T |
|
| Q |
119 |
agcatcacttgtgactttggatctatcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtct |
218 |
Q |
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|||| ||||||||||| |||||||||||||||| ||||||||||| ||| ||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
42210976 |
gccatcccttgtgactttagatctatcatcaaacagtctcactggtccaatccctgagagtttagaaaagctcaagtatatggtgaaattaaatttgtcc |
42210877 |
T |
|
| Q |
219 |
ttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatc |
318 |
Q |
| |
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|||||| | |||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42210876 |
ttcaacaaattggaaggggaagttcctatggaaggtatttttatgaacctaagccaggttgatctccaaggtaacaacaaactatgtggccttaacaatc |
42210777 |
T |
|
| Q |
319 |
aagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctatcatacta |
403 |
Q |
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|||||||||||||||| ||||| ||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||| |
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|
| T |
42210776 |
-----aagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacattttactacctatcatacta |
42210697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 42223292 - 42222989
Alignment:
| Q |
19 |
tgtcagggaacattcctaaattagaagtaagcggattgaaaatacttgtgatggctagaaacaaatttagtggctcgattccaaatagtctaggggattt |
118 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||||||||| ||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
42223292 |
tgtcagggaacattcctaaaatcgaagttgacggattgaaaacactagtgatggcaagaaacaattttagtggctcaattccaaatagtctaggtgattt |
42223193 |
T |
|
| Q |
119 |
agcatcacttgtgactttggatctatcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtct |
218 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
42223192 |
agcatcccttgtgactttagatctatcatcaaacaatctcactggttcaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtcc |
42223093 |
T |
|
| Q |
219 |
ttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatc |
318 |
Q |
| |
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|||||| | |||||||| || |||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
42223092 |
ttcaacaaattggaaggggaagttcctatggaaggcgtttttatgaacctaagccaggttgatatccaaggtaacaacaaactatgtggccttaacaatg |
42222993 |
T |
|
| Q |
319 |
aagt |
322 |
Q |
| |
|
|||| |
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|
| T |
42222992 |
aagt |
42222989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 143 - 403
Target Start/End: Original strand, 33700929 - 33701184
Alignment:
| Q |
143 |
atcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacatt |
242 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || || |
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|
| T |
33700929 |
atcatcaaacaatctcactggtccaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagtt |
33701028 |
T |
|
| Q |
243 |
cctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttggg |
342 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||| |||||||| || |
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| T |
33701029 |
cctatggaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgtggcgttaacaa-----tgaagttacccacaagttagg |
33701123 |
T |
|
| Q |
343 |
agtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctatcatacta |
403 |
Q |
| |
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||| ||||||| ||||||| ||| ||| |||| | |||||||||||| |||||||||||| |
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| T |
33701124 |
agtcactttgtgtgttgcatctaagaaaaacaaaacaaacattttactacctatcatacta |
33701184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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