View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12818_low_4 (Length: 219)

Name: NF12818_low_4

Description: NF12818

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12818_low_4

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 181; E-Value: 6e-98

Query Start/End: Original strand, 17 - 201

Target Start/End: Complemental strand, 55173518 - 55173334

Alignment:

Q	17	agttccgtggaccatgtgcaagcagaaggatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatca	116	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55173518	agttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatca	55173419	T

Q	117	tgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatac	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55173418	tgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatac	55173334	T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 135 - 201

Target Start/End: Original strand, 27721586 - 27721652

Alignment:

Q	135	ttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatac	201	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27721586	ttggcagattaatgcatgcaatggaaggcactgtggtgatacctttacaggtccaaacaaaccatac	27721652	T

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