View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12818_low_5 (Length: 205)
Name: NF12818_low_5
Description: NF12818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12818_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 44244334 - 44244163
Alignment:
| Q |
16 |
atgaaattgcagccattcagacagaagtcattaatcaaaaatatgaatgagaaactcaatcctagattgtaatatggtctgttaaaaatcaataagatca |
115 |
Q |
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| T |
44244334 |
atgaaattgcagccatacagactgaagtcattaaccaaaaagatgaatgagaaactcaatcctagattgtaatatggtctattaaaaatcaataagatca |
44244235 |
T |
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| Q |
116 |
tatataggacaagttacttaccaacttaatattccacctaagaataagattcataaaattgaccggtaatgc |
187 |
Q |
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| T |
44244234 |
tatacaggacaagttatttaccaacttaatattccacctaagaataagatccataaaattgaccggtaatgc |
44244163 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 12541413 - 12541378
Alignment:
| Q |
51 |
caaaaatatgaatgagaaactcaatcctagattgta |
86 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
12541413 |
caaaaacatgaatgagaaactcaatcctagattgta |
12541378 |
T |
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