View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12819_high_11 (Length: 238)
Name: NF12819_high_11
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 12617672 - 12617448
Alignment:
| Q |
1 |
atgaagttttagatgttgaaagagacaatgaattggatgtggtggaagaagttccaattccgaagacagaatttcgtgctttaagtgatttaggaaattt |
100 |
Q |
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| T |
12617672 |
atgaagttttagatgttgaaagagacaatgaattggatgtggtggaagaagttccaattccgaagacagaatttcgtgctttaagtgatttaggaaattt |
12617573 |
T |
|
| Q |
101 |
aagaggaaggcatactgtgattgagattagagatcataatgaagattatcatgaatcaattcgaagatcgttttctatggatcattcatttcaaagtggt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12617572 |
aagaggaaggcatagtgtgattgagattagagatcataatgaagattatcatgaatcaattcgaagatcgttttctatggatcattcatttcaaagtggt |
12617473 |
T |
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| Q |
201 |
gttttgaatgttgatgatgttaatg |
225 |
Q |
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| T |
12617472 |
gttttgaatgttgatgatgttaatg |
12617448 |
T |
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