View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12819_low_11 (Length: 244)
Name: NF12819_low_11
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 9170790 - 9170573
Alignment:
| Q |
16 |
catatctatcgtaccgtgcattataatattgtcttgcctgagatgtagtactgaagaacaattgaaaaaactattaaaataggaaggttcaaacgttaaa |
115 |
Q |
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| T |
9170790 |
catatctatcgtaccatgcattataatattgtcttgcctgagatgcagtactgaagaacaattgaagaaactattaaaataggaaggttcaaacgttaaa |
9170691 |
T |
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| Q |
116 |
gtgccataagaccttaaaggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagatagataaaatgtttggagtc |
215 |
Q |
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| T |
9170690 |
gtgccataagaccttaaaggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagatagataaaatgtttggagtc |
9170591 |
T |
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| Q |
216 |
tataatcaatgtcagtga |
233 |
Q |
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| T |
9170590 |
tataatcaatgtcagtga |
9170573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 9299279 - 9299213
Alignment:
| Q |
131 |
aaaggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagata |
197 |
Q |
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| T |
9299279 |
aaaggaaaaattgatgaaaagttgtggtcaagtaagagttgtggtaaacaatttccaggatcagata |
9299213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 9467669 - 9467736
Alignment:
| Q |
131 |
aaaggaaaacttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagatag |
198 |
Q |
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| T |
9467669 |
aaaggaaaatttgatgaaaaattgcggtcaagtaagagttgtggaagacagtttccaggatcagatag |
9467736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 9258444 - 9258503
Alignment:
| Q |
141 |
ttgatgaaaagttgttgtcaagtaagagttgcggtagacagtttccaggatcagatagat |
200 |
Q |
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| T |
9258444 |
ttgatgaaaagttgtggtcaaataagagttgcggtaaacaatttctggtatcagatagat |
9258503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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