View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12819_low_13 (Length: 237)
Name: NF12819_low_13
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_low_13 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0086 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 44317099 - 44316921
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44317099 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
44317000 |
T |
|
| Q |
119 |
agatatgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44316999 |
agatatgagacaggtagtgtaaccagaaagaaagatgaaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
44316921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 44313287 - 44313116
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44313287 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaaccc-------atataatagacccttcccggcaagccgaggattcagaactgacaag |
44313195 |
T |
|
| Q |
119 |
agatatgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44313194 |
agatatgagacaggtagtgtaaccagaaagaaagatgaaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
44313116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 9339295 - 9339396
Alignment:
| Q |
21 |
gaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaagag |
120 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
9339295 |
gaacgcacattcctcaaagattttccgcgtgtaaaacgctaacccttccaagatttaacagaccctttccgacaaatcgaggattcagaactgacaagag |
9339394 |
T |
|
| Q |
121 |
at |
122 |
Q |
| |
|
|| |
|
|
| T |
9339395 |
at |
9339396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 34099605 - 34099783
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34099605 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaag |
34099704 |
T |
|
| Q |
119 |
agatatgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34099705 |
agatatgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
34099783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 34095975 - 34096149
Alignment:
| Q |
23 |
acgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaagagat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34095975 |
acgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
34096074 |
T |
|
| Q |
123 |
atgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34096075 |
atgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgttttcgtgagttgtg |
34096149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 23 - 197
Target Start/End: Complemental strand, 29562 - 29388
Alignment:
| Q |
23 |
acgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaagagat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29562 |
acgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
29463 |
T |
|
| Q |
123 |
atgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462 |
atgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
29388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 21610769 - 21610943
Alignment:
| Q |
23 |
acgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaagagat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21610769 |
acgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaaaccgaggattcagaactgacaagagat |
21610868 |
T |
|
| Q |
123 |
atgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21610869 |
atgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
21610943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 19429919 - 19429882
Alignment:
| Q |
28 |
ctgtcctcaaggattttccgcgtgtaaaacgctaaccc |
65 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |
|
|
| T |
19429919 |
ctgtcctcaaggattttccgcgtgtagaatgctaaccc |
19429882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 22067663 - 22067844
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
22067663 |
ctgaatgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatttaacagacccttcccgacaagccgaagattcagaactgacaag |
22067762 |
T |
|
| Q |
119 |
aga---tatgagacaggtagtgt-aaccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||| |||| |||||||||||| |||||| |||||| ||||||||||||||| ||||| |||||| | ||||||||||||| |
|
|
| T |
22067763 |
agattttatgtgacaggtagtgtaaaccaggaagaaa-atggaagtgtgaaagtgatatagtttgttttgtacgtgagttgtg |
22067844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 4673397 - 4673560
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||| ||| ||||||| ||||||||||| |||| |
|
|
| T |
4673397 |
ctgaacgtactgtcctcaaggattttccgcatgtaaa-cgctaacctttccaagatttaacagaccctttccgataagccgaagattcagaactcacaaa |
4673495 |
T |
|
| Q |
119 |
aga---tatgagacaggtagtgtaaccagaaagaaagatggaagtgtgaaagggatatgttttgtt |
181 |
Q |
| |
|
||| |||| ||||| ||||||||||||||||||| || |||||| ||||| ||||| ||||||| |
|
|
| T |
4673496 |
agattttatgtgacagatagtgtaaccagaaagaaaaat-gaagtgagaaagtgatatattttgtt |
4673560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 22068228 - 22068151
Alignment:
| Q |
20 |
tgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagc |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
22068228 |
tgaacgcactgtcctcaaggatttttcgcgtgtaaaacgctaaccctttcaagatttaacagacccttcccgacaagc |
22068151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 21144169 - 21144348
Alignment:
| Q |
20 |
tgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||||||||| |
|
|
| T |
21144169 |
tgaacgcactgtcctcaaggattttccgcgtgtagaacgctaacccttccaaaatataacagacccttctcggcatgcctaggattcaaaactgacaaga |
21144268 |
T |
|
| Q |
120 |
ga---tatgagacaggtagtgtaa-ccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||| |||||||||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
21144269 |
gatattatgtgacaggtagtgtaacccagaaagaa--ttggaagtgtgaaagtgatatattttgttttgtacgtgagttgtg |
21144348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 21145486 - 21145312
Alignment:
| Q |
25 |
gcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaagaga--- |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
21145486 |
gcactgtcctcaaggattttccgcgtgtagaacactaaccctcccaagatataacagacccttcctggaaagccgaggattcagaactgacgagagatat |
21145387 |
T |
|
| Q |
122 |
tatgagacaggtagtgtaa-ccagaaagaaagatggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
|||| |||||||||||||| |||||||||| | |||||||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
21145386 |
tatgtgacaggtagtgtaacccagaaagaa--tttgaagtgtgaaagtgatatattttgttttgtacgtgagttgtg |
21145312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 4167783 - 4167875
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaact |
112 |
Q |
| |
|
|||| |||||||||||||| |||||||||| | || |||||||| || ||| || ||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
4167783 |
ctgatcgcactgtcctcaaagattttccgcatatagaacgctaatcc-cccaggagttaacagacccttcccaacaagtcgaagattcagaact |
4167875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 37468 - 37571
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37468 |
ctgaacgcactgtcctcaaggactttccgcgtgtaaaacgctaacccttccaagatataacaaacccttcccggcaagccgaggattcagaactgacaag |
37567 |
T |
|
| Q |
119 |
agat |
122 |
Q |
| |
|
|||| |
|
|
| T |
37568 |
agat |
37571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 41245 - 41348
Alignment:
| Q |
19 |
ctgaacgcactgtcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagacccttcccggcaagccgaggattcagaactgacaag |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||| |
|
|
| T |
41245 |
ctgaacgcactatcctcaaggattttccgcgtgtaaaacgctaacccttccaagatataacagaccctgcccgacaagccaaagattcagaactgacaag |
41344 |
T |
|
| Q |
119 |
agat |
122 |
Q |
| |
|
|||| |
|
|
| T |
41345 |
agat |
41348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 3333611 - 3333655
Alignment:
| Q |
153 |
atggaagtgtgaaagggatatgttttgttgtttacgtgagttgtg |
197 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
3333611 |
atggatgtgcgaaagtgatatgttttgttttttacgtgagttgtg |
3333655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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