View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12819_low_15 (Length: 219)
Name: NF12819_low_15
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 49946192 - 49946393
Alignment:
| Q |
1 |
agtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcgaaacccaccacaccgaaaatccacaaccactc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946192 |
agtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcgaaacccaccacaccgaaaatccacaaccactc |
49946291 |
T |
|
| Q |
101 |
tccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgacgccgtttcaccttcccacctaattcccccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946292 |
tccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaa |
49946391 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
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|
| T |
49946392 |
tc |
49946393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14240416 - 14240215
Alignment:
| Q |
1 |
agtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcgaaacccaccacaccgaaaatccacaaccactc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240416 |
agtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcgaaacccaccacaccgaaaatccacaaccactc |
14240317 |
T |
|
| Q |
101 |
tccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgacgccgtttcaccttcccacctaattcccccaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240316 |
tccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaa |
14240217 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
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|
| T |
14240216 |
tc |
14240215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 16728801 - 16729002
Alignment:
| Q |
1 |
agtagcgccaccggagatggacaacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcgaaacccaccacaccgaaaatccacaaccactc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
16728801 |
agtagcgccaccggagatggacgacgaaacaatctcccgcattataacagaaatctccgacctacgcgaaacccaccacactgaaaatccacaaccactc |
16728900 |
T |
|
| Q |
101 |
tccgaacaatccctctcttctctccaaaccctcctcaaccattcccagcctttagacccactctacgacgccgtttcaccttcccacctaattcccccaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16728901 |
tccgaaaaatccctctcttctctccaaaccctcctaaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaa |
16729000 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
|
|
| T |
16729001 |
tc |
16729002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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