View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12819_low_16 (Length: 216)
Name: NF12819_low_16
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_low_16 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 362787 - 362606
Alignment:
| Q |
20 |
gaatgaacttgttggaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
119 |
Q |
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| T |
362787 |
gaatgaacttgttagaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
362688 |
T |
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| Q |
120 |
ttggaggttaaaggatacaactgtggagagaggatcaatgaagtgcttggagaagatggcgctgttgtataccgtacctttg |
201 |
Q |
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| T |
362687 |
ttggaggttaaaggatacaactgtggagagaggatcagtgaagtgcttggagaagatggcgctgttgtgtaccgcacctttg |
362606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 5912550 - 5912731
Alignment:
| Q |
20 |
gaatgaacttgttggaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
119 |
Q |
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| T |
5912550 |
gaatgaacttgttggaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
5912649 |
T |
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| Q |
120 |
ttggaggttaaaggatacaactgtggagagaggatcaatgaagtgcttggagaagatggcgctgttgtataccgtacctttg |
201 |
Q |
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| T |
5912650 |
gtggaggttaaaggatacagctgtggagaaaggatcaatgaagtgcttggagaagacggcgctgttgtgtaccgtacctttg |
5912731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 5919184 - 5919365
Alignment:
| Q |
20 |
gaatgaacttgttggaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
119 |
Q |
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| T |
5919184 |
gaatgaacttgtttgaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
5919283 |
T |
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| Q |
120 |
ttggaggttaaaggatacaactgtggagagaggatcaatgaagtgcttggagaagatggcgctgttgtataccgtacctttg |
201 |
Q |
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| T |
5919284 |
ttggaggttaaaggatacaactgtggagaaaggatcaacgaagtgcttggtgaagatggtgcagtcgtgtaccgtacctttg |
5919365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5902654 - 5902473
Alignment:
| Q |
20 |
gaatgaacttgttggaagggttttagcatgtttctatccagctgagttttctgttgcattgcacattgatacaaatggtgaaaaacttgacaaatttcct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
5902654 |
gaatgaacttgttggaagggttttagcatgtttctatccagctgagttttctattgctttgcacattgatacaaatggtgaaaagattgacaaatttcct |
5902555 |
T |
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| Q |
120 |
ttggaggttaaaggatacaactgtggagagaggatcaatgaagtgcttggagaagatggcgctgttgtataccgtacctttg |
201 |
Q |
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| T |
5902554 |
ttggaagttaaaggatacaactgtggagaaaggatcaatgaagtgcttggtgaagacggtgcagtcgtgtaccgtacctttg |
5902473 |
T |
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