View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12819_low_2 (Length: 776)

Name: NF12819_low_2
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12819_low_2
NF12819_low_2
[»] chr7 (3 HSPs)
chr7 (233-766)||(43939308-43939857)
chr7 (19-189)||(43939032-43939202)
chr7 (665-762)||(43927847-43927944)
[»] chr1 (5 HSPs)
chr1 (233-348)||(32626905-32627015)
chr1 (233-347)||(24489802-24489911)
chr1 (233-347)||(24498136-24498245)
chr1 (233-347)||(24485307-24485416)
chr1 (662-772)||(15608171-15608285)
[»] chr5 (2 HSPs)
chr5 (233-347)||(34289973-34290082)
chr5 (233-347)||(34296607-34296716)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 233 - 766
Target Start/End: Original strand, 43939308 - 43939857
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttata----------------tatattgccatacacaatggcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||                ||||||||||||||| ||||||    
T  43939308 tacgctccactaatagtaggagttagttttctatactgtgtatcattctgtaactatatatatatatatatatatatatatattgccatacactatggcc 43939407  T
Q  317 atcagaatcatagaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 416  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939408 atcagaatcattgaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 43939507  T
Q  417 gtaactctaagacttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 516  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939508 gtaactctgagacttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 43939607  T
Q  517 acaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagacttttgttaataccggg 616  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43939608 tcaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaataccggg 43939707  T
Q  617 cttctaacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939708 cttctaacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctt 43939807  T
Q  717 taaactcttttccatttttgtacctagttgaatgaattactttccctttg 766  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939808 taaactcttttccatttttgtacctagttgaatgaattactttccctttg 43939857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 43939032 - 43939202
Alignment:
Q  19 ctccatacacaatcctgcttgctatcaccactagtttctccactgtgcttggtgacagatagttcaacaaaaccccaccataatacatcatatccctaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939032 ctccatacacaatcctgcttgctatcaccactagtttctccactgtgcttggtgacagatagttcaacaaaaccccaccataatacatcatatccctaga 43939131  T
Q  119 aagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939132 aagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 43939202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 665 - 762
Target Start/End: Original strand, 43927847 - 43927944
Alignment:
Q  665 gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccc 762  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||  ||| |||||||||||| ||||||||    
T  43927847 gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttccc 43927944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 233 - 348
Target Start/End: Complemental strand, 32627015 - 32626905
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  32627015 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 32626922  T
Q  332 ttatcattcccttttaa 348  Q
    |||||||||||||||||    
T  32626921 ttatcattcccttttaa 32626905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 24489911 - 24489802
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  24489911 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24489818  T
Q  332 ttatcattccctttta 347  Q
    ||||||||||||||||    
T  24489817 ttatcattccctttta 24489802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 24498245 - 24498136
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  24498245 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24498152  T
Q  332 ttatcattccctttta 347  Q
    ||||||||||||||||    
T  24498151 ttatcattccctttta 24498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 24485416 - 24485307
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  |||||||||||  || || |||    
T  24485416 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtgtcaattgaa 24485323  T
Q  332 ttatcattccctttta 347  Q
    ||||||||||||||||    
T  24485322 ttatcattccctttta 24485307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 772
Target Start/End: Complemental strand, 15608285 - 15608171
Alignment:
Q  662 aaagcaatctccataccagaattaccagaaccaacaacaagaacatg----ttcatctttaaactcttttccatttttgtacctagttgaatgaattact 757  Q
    |||||| | ||||| |||||||| ||||| ||||||| |||||||||    ||||||||||||||||||  |||| ||  ||| |||||||||||| |||    
T  15608285 aaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaatgaatcact 15608186  T
Q  758 ttccctttgcttctc 772  Q
    | ||| |||| ||||    
T  15608185 tccccattgcatctc 15608171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 34289973 - 34290082
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  34289973 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34290066  T
Q  332 ttatcattccctttta 347  Q
    ||||||||||||||||    
T  34290067 ttatcattccctttta 34290082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 34296607 - 34296716
Alignment:
Q  233 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatc-atagaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||| || |||    
T  34296607 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34296700  T
Q  332 ttatcattccctttta 347  Q
    ||||||||||||||||    
T  34296701 ttatcattccctttta 34296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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