View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12819_low_3 (Length: 630)

Name: NF12819_low_3
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12819_low_3
NF12819_low_3
[»] chr4 (4 HSPs)
chr4 (374-604)||(28990083-28990313)
chr4 (24-211)||(28989302-28989492)
chr4 (241-316)||(28989950-28990025)
chr4 (552-601)||(1657672-1657721)
[»] chr8 (5 HSPs)
chr8 (383-424)||(8651454-8651495)
chr8 (528-601)||(9269960-9270033)
chr8 (538-601)||(23766691-23766754)
chr8 (552-601)||(3680884-3680933)
chr8 (552-601)||(31874047-31874096)
[»] chr1 (3 HSPs)
chr1 (517-601)||(14717344-14717428)
chr1 (555-601)||(18889032-18889078)
chr1 (552-601)||(29067019-29067068)
[»] chr6 (2 HSPs)
chr6 (389-439)||(26934975-26935025)
chr6 (552-601)||(16913291-16913340)
[»] chr3 (5 HSPs)
chr3 (517-590)||(29776789-29776862)
chr3 (552-601)||(20201160-20201209)
chr3 (552-601)||(20203342-20203391)
chr3 (552-601)||(22286851-22286900)
chr3 (517-601)||(21803458-21803542)
[»] chr7 (2 HSPs)
chr7 (383-445)||(36854683-36854745)
chr7 (555-601)||(47749700-47749746)
[»] chr5 (4 HSPs)
chr5 (411-445)||(9950782-9950816)
chr5 (555-601)||(34843880-34843926)
chr5 (383-445)||(35034069-35034131)
chr5 (537-601)||(6887280-6887344)
[»] chr2 (3 HSPs)
chr2 (552-601)||(41176825-41176874)
chr2 (552-601)||(44167811-44167860)
chr2 (537-601)||(3464907-3464971)
[»] scaffold0045 (1 HSPs)
scaffold0045 (537-601)||(9750-9814)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 374 - 604
Target Start/End: Original strand, 28990083 - 28990313
Alignment:
Q  374 ccttaattggttaataatagtaatttagtacaattcggttcacaaagaatcagtttggttcgaaaaggtacaactatatttttcataaaggtagtaaatg 473  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28990083 ccttaatcggttaataatagtaatttagtacaattcggttcacaaagaatcagtttggttcgaaaaggtacaactatatttttcataaaggtagtaaatg 28990182  T
Q  474 gttaattagaaaacacaaagttacaagtctttttactcgtctcttccctttttatcttgtcaaccgtcacaaatactttagtttcttctccttcatatac 573  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  28990183 gttaattagaaaacacaaagttacatgtctttttactcgtctcttccctttttatcttgtcaaccgtcataaatactctagtttcttctccttcatatac 28990282  T
Q  574 caaagagaggtgatttatagtcaattttaac 604  Q
    | |||||||||||||||||||||||||||||    
T  28990283 ctaagagaggtgatttatagtcaattttaac 28990313  T

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Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 28989302 - 28989492
Alignment:
Q  24 agtgacccttctctacttctcaccataggattatcttatgctttgttgcttgtttctgccacttcctagccatttggatcattttcttggtaccaagaat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28989302 agtgacccttctctacttctcaccataggattatcttatgctttgttgcttgtttctgccacttcctagccatttggatgattttcttggtaccaagaat 28989401  T
Q  124 ataatcaatgaagtcggaaccttttataatta---tccagcagacaatttccttaagttgcgctaagtggaagcaaattaaaaccacatgt 211  Q
    |||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28989402 ataatcaatgaagttggaaccttttataattatagtccagcagacaatttccttaagttgcgctaagtggaagcaaattaaaaccacatgt 28989492  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 28989950 - 28990025
Alignment:
Q  241 tctaaaaactaaactgaattggaccaaaaagaagcaattcatgacctacactttagttcttttcaatgtggggtgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28989950 tctaaaaactaaactgaattggaccaaaaagaagcaattcatgacctacactttagttcttttcaatgtggggtgg 28990025  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 1657721 - 1657672
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  | |||||||||||||||||  |||||||||    
T  1657721 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttt 1657672  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 8651454 - 8651495
Alignment:
Q  383 gttaataatagtaatttagtacaattcggttcacaaagaatc 424  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  8651454 gttaataatagtaatttagtacagttcggttcacaaagaatc 8651495  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 601
Target Start/End: Original strand, 9269960 - 9270033
Alignment:
Q  528 tcttgtcaaccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||| | ||||||| || ||| ||||||||||||||||||  ||||||||| ||||||||||  ||||||||    
T  9269960 tcttgtgagccgtcacgaaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttt 9270033  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 601
Target Start/End: Original strand, 23766691 - 23766754
Alignment:
Q  538 cgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||| ||| ||||||||||| ||||||  |||||||||| ||||||||  |||||||||    
T  23766691 cgtcacaaaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttt 23766754  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 3680884 - 3680933
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||||||| |||||  ||||||||| ||||||||| ||||||||||    
T  3680884 tagtttcttctctttcatccaccaaagaggggtgatttagagtcaatttt 3680933  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 31874047 - 31874096
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  | |||||||||||||||||  |||||||||    
T  31874047 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttt 31874096  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 601
Target Start/End: Complemental strand, 14717428 - 14717344
Alignment:
Q  517 ttccctttttatcttgtcaaccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||| | |||||| | ||||||| || ||| ||||||||||||||||||  ||||||||| |||||||||  |||||||||    
T  14717428 ttccctttctctcttgtgagccgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 14717344  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 18889032 - 18889078
Alignment:
Q  555 tttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||||||| || |||||||||| ||||||||| ||||||||||    
T  18889032 tttcttctcctttatctaccaaagaggggtgatttagagtcaatttt 18889078  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 29067019 - 29067068
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||||||| ||||| || |||| ||||||||||||| |||||||||    
T  29067019 tagtttcttctcattcatttatcaaatagaggtgatttatggtcaatttt 29067068  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 26935025 - 26934975
Alignment:
Q  389 aatagtaatttagtacaattcggttcacaaagaatcagtttggttcgaaaa 439  Q
    |||| ||||||  |||||||||||| |||||||||||||||||||||||||    
T  26935025 aataataatttgatacaattcggtttacaaagaatcagtttggttcgaaaa 26934975  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 16913291 - 16913340
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  ||||||||| |||||||||  |||||||||    
T  16913291 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 16913340  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 590
Target Start/End: Complemental strand, 29776862 - 29776789
Alignment:
Q  517 ttccctttttatcttgtcaaccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgattta 590  Q
    |||||||| | |||||| ||||||||| || || ||||||| |||||||||||  ||||||||| |||||||||    
T  29776862 ttccctttctctcttgtgaaccgtcactaaaaccttagttttttctccttcatccaccaaagaggggtgattta 29776789  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 20201209 - 20201160
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  ||||||||| |||||||||  |||||||||    
T  20201209 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 20201160  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 20203391 - 20203342
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  ||||||||| |||||||||  |||||||||    
T  20203391 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 20203342  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 22286900 - 22286851
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  ||||||||| |||||||||  |||||||||    
T  22286900 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 22286851  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 601
Target Start/End: Original strand, 21803458 - 21803542
Alignment:
Q  517 ttccctttttatcttgtcaaccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||| | |||||| | ||||||| || ||  |||||||||||||||||| ||||||||||  |||||| |  |||||||||    
T  21803458 ttccctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttt 21803542  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 36854745 - 36854683
Alignment:
Q  383 gttaataatagtaatttagtacaattcggttcacaaagaatcagtttggttcgaaaaggtaca 445  Q
    ||||| ||||| ||||| ||||| |||||||||||||||||||| | ||||| |||| |||||    
T  36854745 gttaagaatagcaatttggtacagttcggttcacaaagaatcagctcggttcaaaaaagtaca 36854683  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 47749700 - 47749746
Alignment:
Q  555 tttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||||||||||  ||||||||| |||||||||| |||||||||    
T  47749700 tttcttctccttcatccaccaaagaggggtgatttatggtcaatttt 47749746  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 9950782 - 9950816
Alignment:
Q  411 gttcacaaagaatcagtttggttcgaaaaggtaca 445  Q
    |||||||||||||||||||||||| ||||||||||    
T  9950782 gttcacaaagaatcagtttggttctaaaaggtaca 9950816  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 34843880 - 34843926
Alignment:
Q  555 tttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||||    
T  34843880 tttcttctccttcatcgaccaaagagggatgatttatagtcaatttt 34843926  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 35034069 - 35034131
Alignment:
Q  383 gttaataatagtaatttagtacaattcggttcacaaagaatcagtttggttcgaaaaggtaca 445  Q
    ||||| ||||| ||||| ||||| |||||||||||||||||||| | ||||| |||| |||||    
T  35034069 gttaagaatagcaattttgtacagttcggttcacaaagaatcagctcggttcaaaaaagtaca 35034131  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 6887344 - 6887280
Alignment:
Q  537 ccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||| || ||| ||||||||||||||||||  | ||||||| |||||||||  |||||||||    
T  6887344 ccgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 6887280  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 41176825 - 41176874
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  ||||||||| |||||||||  |||||||||    
T  41176825 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 41176874  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 44167860 - 44167811
Alignment:
Q  552 tagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    ||||||||||||||||||  ||||||||| |||||| ||| |||||||||    
T  44167860 tagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttt 44167811  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 3464907 - 3464971
Alignment:
Q  537 ccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||| | ||| || |||||||||||||||  ||||||||| |||||||||  |||||||||    
T  3464907 ccgtcacacaaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 3464971  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 9814 - 9750
Alignment:
Q  537 ccgtcacaaatactttagtttcttctccttcatataccaaagagaggtgatttatagtcaatttt 601  Q
    |||||||||| ||  ||||||||||||||||||  ||||||||| | |||||||  |||||||||    
T  9814 ccgtcacaaaaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttt 9750  T

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