View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12819_low_4 (Length: 403)
Name: NF12819_low_4
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 49277968 - 49277589
Alignment:
| Q |
18 |
gttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagc |
117 |
Q |
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| T |
49277968 |
gttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagc |
49277869 |
T |
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| Q |
118 |
cattggctcgccagtttatttctatgaatatgaac-----tacattccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagt |
212 |
Q |
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| T |
49277868 |
cattggctcgccagtttatttctatgaatatgaacatgattacattccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagt |
49277769 |
T |
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| Q |
213 |
gagagaaaagtgtggaagatttcaaaagagggaactagagctaggttttggtttgtgagcaccggtggttttcctgggaacctttttagccagttcaaga |
312 |
Q |
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| T |
49277768 |
gagagaaaagtgtggaagatttcaaaagagggaactagagctaggttttggtttgtgagcaccggtggttttcctgggaacctttttagccagtttaaga |
49277669 |
T |
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| Q |
313 |
ttgagaggcttgagggagaacatgcttatgagatttatagctttctgtactgtccttctgttcctggtactctctgtgct |
392 |
Q |
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| T |
49277668 |
ttgagaggcttgagggagaacatgcttatgagatttatagctttctgtactgtccttctgttcctggtactctttgtgct |
49277589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 49272045 - 49271684
Alignment:
| Q |
18 |
gttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagc |
117 |
Q |
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| T |
49272045 |
gttactacgtatttccactttgggccgacaatggaggcattacattaggacacacaagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgc |
49271946 |
T |
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| Q |
118 |
cattggctcgccagtttatttctatgaa-----tatgaactacattccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagt |
212 |
Q |
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|| ||| | || || ||||||| || | | | | |||||||||||||||||||| |||||| |||||||||| || ||||||||||||||| | |
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| T |
49271945 |
aatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctcactgacctcaccattgagattcctattctgggtagtccttgcaat |
49271846 |
T |
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| Q |
213 |
gagagaaaagtgtggaagatttcaaaagagggaactagagctaggttttggtttgtgagcaccggtggttttcctgggaacctttttagccagttcaaga |
312 |
Q |
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| T |
49271845 |
gaaccaaaagtgtggaggcttttaaagg------ttgggtctgggttttggtttgtgagcactggtggtgcagctggggatcttgttagcaagttcaaga |
49271752 |
T |
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| Q |
313 |
ttgagaggcttgagggagaacatgcttatgagatttatagctttctgtactgtccttctgttcctggt |
380 |
Q |
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|||||||||||| || ||||||||||||||||| ||||||||| || |||||| |||||||||||| |
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| T |
49271751 |
ttgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtccctctgttcctggt |
49271684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 49269545 - 49269483
Alignment:
| Q |
70 |
aacaagaaacaaaacatgccctcttgatgttatccgtaaccctgaagccattggctcgccagt |
132 |
Q |
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| T |
49269545 |
aacaagaaacaaaacatgtcctcttgatgtaattcgtaaccctaaagaactcggctcgccagt |
49269483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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