View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12819_low_5 (Length: 388)

Name: NF12819_low_5
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12819_low_5
NF12819_low_5
[»] chr7 (3 HSPs)
chr7 (1-369)||(12825323-12825692)
chr7 (27-171)||(35400749-35400893)
chr7 (155-280)||(35024563-35024688)
[»] chr4 (3 HSPs)
chr4 (12-369)||(37035353-37035710)
chr4 (188-369)||(24189337-24189517)
chr4 (33-88)||(24189605-24189660)
[»] chr3 (2 HSPs)
chr3 (24-253)||(47820122-47820348)
chr3 (242-280)||(28571641-28571679)
[»] chr6 (2 HSPs)
chr6 (155-365)||(34774684-34774893)
chr6 (28-254)||(11779930-11780156)
[»] chr1 (2 HSPs)
chr1 (155-359)||(42748870-42749073)
chr1 (22-53)||(47318630-47318661)
[»] chr8 (1 HSPs)
chr8 (144-184)||(38553114-38553154)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 12825323 - 12825692
Alignment:
Q  1 agcagccacgtaaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccct 99  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12825323 agcagccgcgtaaggcattccctcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacacct 12825422  T
Q  100 ttacatcatccaccatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataag 199  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  12825423 ttacatcatccaccatttcatccaccgctgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaactcgtagaatgccgaataag 12825522  T
Q  200 tcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaacttatccaatcac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  12825523 tcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaaagaacgaataaattaggcggaattaaatgaaacttatcccatcac 12825622  T
Q  300 ccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatcc 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12825623 ccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgacgattcatcc 12825692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 35400893 - 35400749
Alignment:
Q  27 ttccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccg 126  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||||||| | ||| | ||||| |||  |||| |||||||||||||||||| ||||      
T  35400893 ttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacatcatccaccatttcacccacat 35400794  T
Q  127 ccgagttccgattattaaaaatcttatcattccttgctttccaca 171  Q
     ||  || || |||||||||| |||||||||||| ||||||||||    
T  35400793 acggatttcggttattaaaaaccttatcattcctcgctttccaca 35400749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 35024563 - 35024688
Alignment:
Q  155 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 254  Q
    |||||| |||||||| || ||| |||||||   |||||||||||| |||||  | |||||  ||| |||||||||||| || ||  ||||||||||||||    
T  35024563 attcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaa 35024662  T
Q  255 tgaacgaataaattaggcggaattaa 280  Q
     | | ||| || ||||| ||||||||    
T  35024663 aggatgaagaagttagggggaattaa 35024688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 37035710 - 37035353
Alignment:
Q  12 aaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatcc 110  Q
    |||||||||| |||||| ||||||||| |||||  |||||||||||||||| | |||| | |||||||||||||||||||||||  |||| | ||| |||    
T  37035710 aaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaataccttaatatcctcc 37035611  T
Q  111 accatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccat 210  Q
    || || ||  ||||| |||  |||||||||||||||||||| ||||| || |||||||| |||||| |||||||   ||||||||| | |||||| || |    
T  37035610 acaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccct 37035511  T
Q  211 tacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacac 310  Q
     ||| || |||||| ||||||| || |||| ||||||||||||    || ||||||||||||||||||| |  |||| | ||| | || |||||| | |     
T  37035510 gacgaatacgcttaatcctctccccgccactccaacactcccataagacaaataaattaggcggaattacaataaacctctcccacca-ccccataatat 37035412  T
Q  311 cttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatcc 369  Q
    |  |||| |||||| |||||||||||||||| ||||| |||||| |||| |||||||||    
T  37035411 cacgccacacccttccggcaacctcacaatggagaaaaagatgagttgacgattcatcc 37035353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 369
Target Start/End: Complemental strand, 24189517 - 24189337
Alignment:
Q  188 atgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaac 287  Q
    |||||||||||||||||  || ||||| |||| |||||||  ||| ||||||| ||||||||||||| || |||| || |||||| |||||||  ||| |    
T  24189517 atgccaaataagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaaagagcgaacaagttaggcagaattaagagaatc 24189418  T
Q  288 ttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatcc 369  Q
     | |||   |  || ||| | ||||||||| |||||| | || || |||||||||||||| || |||||||| |||||||||    
T  24189417 ctctcc-ccctaccgcataataccttgccacacccttcccgctacatcacaatgaagaaagaggtgaattgacgattcatcc 24189337  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 24189660 - 24189605
Alignment:
Q  33 caccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca 88  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||    
T  24189660 caccattcatagtacatacacggaggcatagagattctatccaaagaccatcgcca 24189605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 47820348 - 47820122
Alignment:
Q  24 ggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatcca 123  Q
    |||||||||||||| |||||  ||||||| |||| ||| |  ||| | ||||||||||||| |||||| | | |||| | ||| ||||| ||   |||||    
T  47820348 ggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaat---atcca 47820252  T
Q  124 ccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgctt 223  Q
    || || | ||||||||||| || ||||| |||||||| |||||||| |||||| ||||||||| ||||||||| | |||||| ||   ||| || | |||    
T  47820251 ccaccaaattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactctt 47820152  T
Q  224 attcctctctccaccacaccaacactccca 253  Q
     |||||||| ||||| ||||||||||||||    
T  47820151 cttcctctccccaccgcaccaacactccca 47820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 28571679 - 28571641
Alignment:
Q  242 ccaacactcccaatgaacgaataaattaggcggaattaa 280  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  28571679 ccaacactcccaatgcacaaataaattaggcggaattaa 28571641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 365
Target Start/End: Original strand, 34774684 - 34774893
Alignment:
Q  155 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 254  Q
    |||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || |||||  ||| |||||||||||| || || |||||||||||||||    
T  34774684 attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa 34774783  T
Q  255 tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 354  Q
     | | ||| || ||||| ||||||||    | | | ||| | || |||||| ||||| ||||| || ||  | |||||||||||||| ||||||||||||    
T  34774784 aggatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatga 34774882  T
Q  355 attgatgattc 365  Q
    |||||||||||    
T  34774883 attgatgattc 34774893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 11780156 - 11779930
Alignment:
Q  28 tccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgc 127  Q
    ||||| |||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| | | |  |||| |  || ||||| ||||| |||||  |    
T  11780156 tccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaaccttaatctcctccacaatttcttccacatc 11780057  T
Q  128 cgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattc 227  Q
    ||  |||||   ||||||||   ||||||||||||| ||||||||  || | | ||| |  |||||||||||||  |  || |||| ||||| ||||| |    
T  11780056 cggattccggccattaaaaactctatcattccttgccttccacaacccccacaccgttgcgtgccaaataagtcgaagccccttacagattctcttatcc 11779957  T
Q  228 ctctctccaccacaccaacactcccaa 254  Q
    |||||| |||||| |||||||||||||    
T  11779956 ctctctacaccactccaacactcccaa 11779930  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 359
Target Start/End: Original strand, 42748870 - 42749073
Alignment:
Q  155 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 254  Q
    |||||| |||||||| || ||| ||||||| | |||||||||||| ||||| ||  ||||  ||| |||||||||||| || || | |||||||||||||    
T  42748870 attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa 42748969  T
Q  255 tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 354  Q
     ||| ||| || ||||| ||||||||    | | | ||| | || |||||| ||||| ||||| || ||  |||||||||||||||||||||| ||||||    
T  42748970 agaatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatga 42749068  T
Q  355 attga 359  Q
    |||||    
T  42749069 attga 42749073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 47318630 - 47318661
Alignment:
Q  22 tcggattccaacaccattcataatacatacaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  47318630 tcggattccaacaccattcataatacatacaa 47318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 38553154 - 38553114
Alignment:
Q  144 aaaatcttatcattccttgctttccacaaaaccaaaatcgt 184  Q
    ||||||||||||||||| ||||||||||| ||| |||||||    
T  38553154 aaaatcttatcattcctagctttccacaacacccaaatcgt 38553114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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