View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12819_low_7 (Length: 326)
Name: NF12819_low_7
Description: NF12819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12819_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 70 - 308
Target Start/End: Complemental strand, 2293483 - 2293245
Alignment:
| Q |
70 |
caactaataaattttccaa-aacaattaatttgccataattcaacagtacatcatcattcttaactcaacactagtacaccctaacttaaaattcaacaa |
168 |
Q |
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| T |
2293483 |
caactaataaattttccaacaacaattaatttgccataattcaacagtacatcatcattcataactcaacactaatacaccctaacttaaaattcaacaa |
2293384 |
T |
|
| Q |
169 |
caatacaccaaagattaaaaatcaacaataattaaacattacgnnnnnnntgtttgccacaatttaaaattaagtcaaatctctactgatatgtgtatac |
268 |
Q |
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| T |
2293383 |
caatacaccaaagattaaaaatcgacaataattaaacattacg-aaaaaatgtttgccacaatttaaaattacgtcaaatctctactgatatgtgtacac |
2293285 |
T |
|
| Q |
269 |
ttgtagttcgaacgaaccaaaagatatggcatgtcatcgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2293284 |
ttgtagttcgaacgaaccaaaagatatggcatgtcatcgg |
2293245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 2293517 - 2293480
Alignment:
| Q |
17 |
aaccaagacacaaaacgacctatctagatacaatcaac |
54 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2293517 |
aaccaagacacaaaacgacctatctagatacaatcaac |
2293480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 30487097 - 30487020
Alignment:
| Q |
119 |
atcatcattcttaactcaacactagtacaccctaacttaaaattcaacaacaatacaccaaagattaaaaatcaacaa |
196 |
Q |
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|||||||||| || ||||||| | ||| || |||||| ||||||||||||||||| ||||||||||||| ||||||| |
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| T |
30487097 |
atcatcattcacaattcaacaccaatacgccataacttcaaattcaacaacaatactccaaagattaaaattcaacaa |
30487020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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