View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1281_high_10 (Length: 610)
Name: NF1281_high_10
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_10 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0202 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 31055546 - 31055710
Alignment:
| Q |
103 |
ttaagaaaattgagcctaatgcagataattgaaaccaagaaaaacggtctaacacgtctttttcattataaacttgcagaatacaaaatatgactacctt |
202 |
Q |
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| T |
31055546 |
ttaagaaaattgagcttaatgcagataattgaaaccaagaaaaacggtctaacacgtctttttcattataaacttgcagaatacaaaatatggctacctt |
31055645 |
T |
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| Q |
203 |
ttaaaatattatagtgccatttgatctatgaccgacgaccacctttagtgggataaggtttggttgtt |
270 |
Q |
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| T |
31055646 |
ttaaaacattatggtgtcatttgatctatgac---cgaccacctttagtgggataaggtttggttgtt |
31055710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 31056501 - 31056576
Alignment:
| Q |
268 |
gttgtagatcttacatgatttggattatccggaggaagagtagatgttgaaccccatatacatgttatataaccttat |
345 |
Q |
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| T |
31056501 |
gttgtagatcttacatgatttggattatatggaggaagagtagatgttgaa--ccgtatacatgttatataaccttat |
31056576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 487 - 610
Target Start/End: Original strand, 27687365 - 27687488
Alignment:
| Q |
487 |
atgaacaaacctagatctaaaaggacagaactgatatcattaatcaagtgaaacagagaggagtaaacgaaaacacgttttgaattaggtgcagtgcaca |
586 |
Q |
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| T |
27687365 |
atgaacaaacctacatctgaaaggacagaattgatatcgttaatcaagtgaaacagagaggagcaaacgaaaacacgttttgaattaggtgcagtgcacg |
27687464 |
T |
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| Q |
587 |
acgtagttgccgggagcaatcaaa |
610 |
Q |
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| T |
27687465 |
acgtagttgccgggagcaatcaaa |
27687488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 488 - 606
Target Start/End: Original strand, 27687248 - 27687366
Alignment:
| Q |
488 |
tgaacaaacctagatctaaaaggacagaactgatatcattaatcaagtgaaacagagaggagtaaacgaaaacacgttttgaattaggtgcagtgcacaa |
587 |
Q |
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| T |
27687248 |
tgaacaaacctagttttgaaaggacagaaccgatatcgtcaatcaagagaaacagagaggagcaaacaaaaacacgttttgaattaggtgcagtgcacga |
27687347 |
T |
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| Q |
588 |
cgtagttgccgggagcaat |
606 |
Q |
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| T |
27687348 |
tgtagttgccgggagcaat |
27687366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 53451522 - 53451477
Alignment:
| Q |
57 |
tatgtgtctgtgtatttgtttgcttcacccacttctcttctttctc |
102 |
Q |
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| T |
53451522 |
tatgtgtctatgtatttgtttgcttctcccactgctcttctttctc |
53451477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 6319 - 6267
Alignment:
| Q |
268 |
gttgtagatcttacatgatttggattatccggaggaagagtagatgttgaacc |
320 |
Q |
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| T |
6319 |
gttgtagatcttacatgatttggatcatctggaggaagggcagatgttgaacc |
6267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 360
Target Start/End: Original strand, 19558 - 19649
Alignment:
| Q |
268 |
gttgtagatcttacatgatttggattatccggaggaagagtagatgttgaaccccatatacatgttatataaccttattgagtcgtatgatat |
360 |
Q |
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| T |
19558 |
gttgtagatcttacatgatttggatcatctggaggaagggcatatgttgaa-acctcatacatgatatatcacctttttgaatcgtatcatat |
19649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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