View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1281_high_16 (Length: 450)
Name: NF1281_high_16
Description: NF1281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1281_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 38570547 - 38570865
Alignment:
| Q |
30 |
aagttgatatttctcttatttttatttaaaaaattgtgttagtgtgcaaccatgaatttccacccatattattatagtattaataaaaaatgaatgaaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
38570547 |
aagttgatatttctcttatttttatttaaaaaattgtgttagtgtgcaaccatgaatttccacccatattattatagtcttaataaaaaattaatgaaaa |
38570646 |
T |
|
| Q |
130 |
taagtgtgtgcaaagtttagcaaccatgaatttccttcctcaaacgtatcctgtcatgttgcttctatgtactatgtagtactccttacttcaaaaccta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38570647 |
taagtgtgtgcaaagtttagcaaccatgaatttccttcctcaaacgtatcctgtcatgttgcttctatgtacta-----------ttacttcaaaaccta |
38570735 |
T |
|
| Q |
230 |
ccatgttatattagtaaggcattattattgtgttcnnnnnnnaccccacaacctatctaatcactcaccaaataaattcatgaacaacacatcttaattc |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38570736 |
ccatgttatattagcaaggcattattattgtgtcctttttttaccccacaacctatctaatcactcaccaaataaattcatgaacaacacatcttaattc |
38570835 |
T |
|
| Q |
330 |
cattgctttctctccctcatcttcatctca |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38570836 |
cattgctttctctccctcatcttcatctca |
38570865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University